Protein Info for HER17_RS08750 in Pectobacterium carotovorum WPP14

Annotation: MFS transporter

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 402 transmembrane" amino acids 16 to 39 (24 residues), see Phobius details amino acids 45 to 65 (21 residues), see Phobius details amino acids 79 to 100 (22 residues), see Phobius details amino acids 106 to 126 (21 residues), see Phobius details amino acids 147 to 168 (22 residues), see Phobius details amino acids 173 to 189 (17 residues), see Phobius details amino acids 218 to 241 (24 residues), see Phobius details amino acids 248 to 270 (23 residues), see Phobius details amino acids 280 to 298 (19 residues), see Phobius details amino acids 304 to 326 (23 residues), see Phobius details amino acids 338 to 359 (22 residues), see Phobius details amino acids 367 to 388 (22 residues), see Phobius details PF07690: MFS_1" amino acids 20 to 237 (218 residues), 54.2 bits, see alignment E=5.7e-19 amino acids 223 to 389 (167 residues), 60.3 bits, see alignment E=8.2e-21

Best Hits

KEGG orthology group: None (inferred from 91% identity to eca:ECA1818)

Predicted SEED Role

"transporter, putative"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (402 amino acids)

>HER17_RS08750 MFS transporter (Pectobacterium carotovorum WPP14)
MVNPYRELFTAPGTKGFALAGLLARIPLPMTGIGIITMLSQLRGSYALAGAVSATFVLTY
ALLSPQISRLVDRHGQGRVLPLATTVSVIGMLLLLVSTWWQAPDWSLFIGALLAGFMPSM
SAMVRARWTAIYRGQPRLQTAYSLETVLDEVTFIAGPPLAVGLSVAIFPQAGPLAAALLL
IIGVFALVTQRGTEPPVKAQDVSTDRSGSVIKQTNVRLLALLMVAMGVIVGTVDIVSVAF
AEQRGQPAAASLVLSAYAIGSCLAGLVFGALKLRTALHQLLLLGGLATAATTLPLLLVGS
IPALAAAVLIAGLFFAPTMIVAMSLVERLVPEHRLTEGMTWLLAGLNVGVALGAAVSGHV
VDSGGARAGFTVALCAGVLVLLVALWGYQRLRAHASSLPHTA