Protein Info for HER17_RS08315 in Pectobacterium carotovorum WPP14

Annotation: methyltransferase regulatory domain-containing protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1139 PF13847: Methyltransf_31" amino acids 45 to 158 (114 residues), 38.3 bits, see alignment E=6.4e-13 PF13649: Methyltransf_25" amino acids 47 to 145 (99 residues), 46.9 bits, see alignment E=2.1e-15 PF08242: Methyltransf_12" amino acids 48 to 146 (99 residues), 37.4 bits, see alignment E=1.9e-12 PF10119: MethyTransf_Reg" amino acids 219 to 300 (82 residues), 64.1 bits, see alignment 9.5e-21 PF13181: TPR_8" amino acids 685 to 716 (32 residues), 14.8 bits, see alignment (E = 1.5e-05) PF13844: Glyco_transf_41" amino acids 761 to 914 (154 residues), 88 bits, see alignment E=2.6e-28 amino acids 936 to 1099 (164 residues), 69 bits, see alignment E=1.4e-22

Best Hits

KEGG orthology group: None (inferred from 93% identity to eca:ECA1732)

Predicted SEED Role

"Predicted O-linked N-acetylglucosamine transferase, SPINDLY family"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1139 amino acids)

>HER17_RS08315 methyltransferase regulatory domain-containing protein (Pectobacterium carotovorum WPP14)
MTLDTAASHPPMSAADRCPLPYTSPTHLQAVAYLHGIVAADPDRARVLELGCMSGANLLP
FATAYPQAQAIGIDLDEEKIAQGQMWVQQYGLTNLQLQAMDLASLLDSDLGKFDYIIVHG
VFGLISGEARSMLLAYCQRHLSAKGVVCFSYSTYPGGKTEEILQDALNLHASLAETPEQQ
QASARAMLSYLALGMSAGNPQRTAIATLVEEAEQLGDVSLALNYLQGLNQPCYLLDFNAQ
ITQEGLAYVGEIEPHTEIASHYGEQVDNLLRTICPAGNKILKQQYLDFNVGRKRRFSLLV
AAERAEKLESEIDVSRLDKLSWAGSFRRVMLNKGLASNSYVTNTGIQISTDHELTQQILD
VLGNAWPASVSFKQLIFNTHFPEKENDEQEHENNVRESLYALLKQGMSSIHFCVGECAYR
KSEFSALRVLPNCGDIYPAFNYWYESFTLPSEAQGLKIPMGLLDEQEEDSLALLDELHHK
GLMIGSALAWQRYLQKRMELAKDVNEVIHNINPLIMYSSNASGGGLFKASDVIKAEKSKK
EFVNDPIDAQVKRQLYDLLQKQKYDEARSLAEELTVKQPNNLQNWITLERINFVTGDKNA
AIFSLAKVISMHSNAWLVYSELSSLLHNTYHYWEAINLAYRIIRCDGSIAVAWNVVALVY
LKFENMAGAEVCIEKAIKLLPNDAAVLNAMAMVLDKKSDVESAIDYYRKAVTNAPEDLSL
YSNLLFALLHNAKIPASEIFSEHLSYGEVVEKRNGALAPVHYLQNKDPDRVLRVGFVSGD
LYSHPVSKFLSPVWNDIDHQHFSLYAYSTSHHYDDVTRMLEKSSTAWRNVASSSDTELFE
LIKRDEIDILFDLSGHTGDNRLSMFAMKPAPIQISWIGYPGTTGLKAMDYYLVMNHAPYP
EVLAHQFTEKLLYVLFDRQFEPVVNGPEVNDLPALTNGYLTFASFNRPTKINDTVLSAWG
KILVQLPTSKMIIGALPSMQTREHIRKKLEAQGVQPEQLIFRERVNIMNYLAMHQEIDVL
LDTFPYTGGTTTNYALWMGVPTLTLAGETYAARQGVVNLGQAGLNEFIADSEADYIEKAI
SWNNRLDELNQIRHSLRKKMEHDIDTADVTASTYFQQALRTVWKAYCAGEPPKSYSIGH