Protein Info for HER17_RS08020 in Pectobacterium carotovorum WPP14

Annotation: N-6 DNA methylase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 717 PF02384: N6_Mtase" amino acids 303 to 476 (174 residues), 52.4 bits, see alignment E=5.4e-18 amino acids 579 to 691 (113 residues), 24.5 bits, see alignment E=1.7e-09 PF01170: UPF0020" amino acids 360 to 464 (105 residues), 28 bits, see alignment E=1.7e-10

Best Hits

KEGG orthology group: None (inferred from 97% identity to efe:EFER_3102)

Predicted SEED Role

"N-6 DNA methylase"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (717 amino acids)

>HER17_RS08020 N-6 DNA methylase (Pectobacterium carotovorum WPP14)
MAKEAKAKKQDPQQQLEALFNKLVKQHSEFTQPLVELPEHEFAKAGLIQGLVEGNLTPPV
MLIALAEGHWEYAADTAKFDDLAYQLLSDIEGDWPVFAVADDGMNQRILALFGADGSDGT
HGADTLPSLEELRSFDRMERDPTFRWSMRVYTRLMQRFDAFHENVYRVTKDKVNDKNDII
EEVAKLLFLETFRVHHDEDLTFKDDEGNTLRFRDVYDWQYVARHGDKAVAQIKAAFEEFK
SHENYVVISDDGSRNPIFSKETHLRLSVAKNYQDLLEAIQNLGPVKTNDGKTAKEHGTLA
DVSGDLLGRVFDVFLRANFESKGGLGVYLTPNPVKQAMLEIAMHDIDDDDEMRSRLANGD
FRFCDPTCGSFGFGSVALSQIDKWIDFKLVLADDKKESLKQKLRNYAFTGADAAPRMVML
ARVNMALQGAPKAQIFYTDNSLTTKALQPNSFDLICTNPPFGTPKFDKGKNGQNSKANYE
ANMEQVLGGFRPTQKVVDSYNAWYDHVKMKWQDIGDLELDDNGEPKWAGYRTDLRKTGGT
DKKPFYSLQPTTAGLALGSKPDSKGNWQPVGATIDPAVLFIDRCLQLLKPGGRLLIVLPD
GILCNSGDRYVREYIMGKKDEKTGEFVGGKAIVKAVISLPSDCFKLSGTGAKTSILYLQK
RHANPNQPEQFLPEPQTDVFMAVAETLGYVVKNNIEDYNAGVANDLDKIVSAYKRGE