Protein Info for HER17_RS07500 in Pectobacterium carotovorum WPP14

Annotation: efflux RND transporter permease subunit

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1025 transmembrane" amino acids 15 to 39 (25 residues), see Phobius details amino acids 340 to 361 (22 residues), see Phobius details amino acids 368 to 389 (22 residues), see Phobius details amino acids 398 to 420 (23 residues), see Phobius details amino acids 440 to 460 (21 residues), see Phobius details amino acids 472 to 499 (28 residues), see Phobius details amino acids 528 to 547 (20 residues), see Phobius details amino acids 861 to 880 (20 residues), see Phobius details amino acids 888 to 906 (19 residues), see Phobius details amino acids 912 to 935 (24 residues), see Phobius details amino acids 963 to 982 (20 residues), see Phobius details amino acids 988 to 1012 (25 residues), see Phobius details PF00873: ACR_tran" amino acids 15 to 1007 (993 residues), 527.1 bits, see alignment E=4.3e-162

Best Hits

KEGG orthology group: None (inferred from 92% identity to pct:PC1_2689)

Predicted SEED Role

"RND efflux transporter"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1025 amino acids)

>HER17_RS07500 efflux RND transporter permease subunit (Pectobacterium carotovorum WPP14)
MAQEPQSAARFNLSAWALAHQQFVAFMMLVIMAAGVMSYQRLPRNEDPAFTIKSAVVSAA
WPGATVSDTVNFVTDKLEKKLQETPYLDYVESYTRAGESVVFVNLRDDTPPSAVPNIWYT
VRKKMTDIASSLPDGVSPPAVNDEFDDTFGTIYGFTADGFSPRELRDKVDDIRSALLSVP
DVGKVDMLGVEEEQIVVTFSPRRLAGLGLDPQQVIDSLKAQNAVTPAGIIRTEDEKVAVR
VSGAFTSEQSLRQITLRIGGKFVPLTDIATISRETAEPPSPTFRVNGEKAVGLAISMAPT
GNMLNFGQAIRDKMNVIATQLSHGIEMTRVADQSEVVKGAVGGFIKVLLEAVAIVLAVSF
VSLGSRAGLVVAASIPIVLAMTFIGMEITGIGLQRISLGALIISLGLLVDDAMITVEAMV
SRLEEGWDRKRAAAWAYESTAFPMLTGTLVMIAGFIPVGFASSSAGEYCFSLFVVVLIAL
LSSWIVAILFSPLFGVWLLPKMFRHQHNEPGRVGRFYRQWLQRALAKRGMTLLIAVLLLV
VALFGATRLEGEFFPASDRPELLVSLTLPANASQTATEAQAKRLEAILKDDPDVDHFSTY
VGSGAVRFYLPMDVLLSHENIAQLVVVAKNLEARDALAAKLNQVLERDFSNIVARVSALE
LGPPVGWPLKYRVAGPDIHRVRDIAQGLASLVGNQADVREVNLTAGEPERSVNVVLNQTE
ARAVGISSQDVASMLAAIFSGSTLTSVRDDNRLVDVVVRGTPQERRDVATIANLQIPIAD
GRSVPLGQIATVAYGVDDPIIWRRQREPFITVQMDVAPGMRAPALSEKLAPEIERYRAAL
PAGYHITEGGVAAESDKGNGSVYAVLPVTLLVMLVLLMIQLQRISRMVLAFLTAPFGLIG
IVAAMLPTGTPMGFVALLGAIALAGMIIRNAVILIGEVDLNVKNGQPATEAIVNAAHHRS
RPIVLTALAAILGMIPIAHQVFWGPMAYAIIGGLMVATLLTLLALPAALSLLMQWERRKA
VNPTQ