Protein Info for HER17_RS07180 in Pectobacterium carotovorum WPP14

Annotation: NADH-quinone oxidoreductase subunit M

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

• TIGR01972: proton-translocating NADH-quinone oxidoreductase, chain M
  • amino acids 3 to 496 (494 residues), 600.1 bits, E=1.5e-184
• PF00361: Proton_antipo_M
  • amino acids 134 to 429 (296 residues), 234.6 bits, E=7.2e-74

Best Hits

Swiss-Prot: 86% identical to NUOM_ECO57: NADH-quinone oxidoreductase subunit M (nuoM) from Escherichia coli O157:H7

KEGG orthology group: K00342, NADH dehydrogenase I subunit M [EC: 1.6.5.3] (inferred from 99% identity to pct:PC1_2761)

MetaCyc: 86% identical to NADH:quinone oxidoreductase subunit M (Escherichia coli K-12 substr. MG1655)
NADH-DEHYDROG-A-RXN [EC: 7.1.1.2]; 7.1.1.- [EC: 7.1.1.2]

Predicted SEED Role

"NADH-ubiquinone oxidoreductase chain M (EC 1.6.5.3)" in subsystem Respiratory Complex I (EC 1.6.5.3)

MetaCyc Pathways

• NADH to cytochrome bd oxidase electron transfer I (2/2 steps found)
• NADH to dimethyl sulfoxide electron transfer (2/2 steps found)
• NADH to fumarate electron transfer (2/2 steps found)
• nitrate reduction VIII (dissimilatory) (2/2 steps found)
• aerobic respiration III (alternative oxidase pathway) (2/3 steps found)
• NADH to cytochrome bo oxidase electron transfer I (1/2 steps found)
• NADH to hydrogen peroxide electron transfer (1/2 steps found)
• NADH to trimethylamine N-oxide electron transfer (1/2 steps found)
• aerobic respiration I (cytochrome c) (2/4 steps found)
• NAD(P)/NADPH interconversion (3/6 steps found)
• Fe(II) oxidation (1/6 steps found)

KEGG Metabolic Maps

• Oxidative phosphorylation

Isozymes

Compare fitness of predicted isozymes for: 1.6.5.3

Use Curated BLAST to search for 1.6.5.3 or 7.1.1.2

Protein Sequence (511 amino acids)

>HER17_RS07180 NADH-quinone oxidoreductase subunit M (Pectobacterium carotovorum WPP14)
MLLPWLILLPFIGGLLCWQLERFGTKVPRWIALIAMGLTLALSLQLWLQGGYSLTAPTGV
PQWQSEFYVPWIPRFGIGIHLALDGLSLLMVVLTGLLGVLAILCSWNEIQRYQGFFHLNL
LWILGGVIGVFLAIDMFLFFFFWEMMLVPMYFLIALWGHKGSDGKTRITAATKFFIYTQS
SGLIMLIAILALVFVHHNATGVWTFNYEDLLKTPMSYGVEYLLMLGFFIAFAVKMPVVPL
HGWLPDAHSQAPTAGSVDLAGILLKTAAYGLLRFSLPLFPNASHAFAPIAMWLGVIGIFY
GAWLAFKQTDIKRLIAYTSVSHMGFVMIAIYSGNQLAYQGAVIQMIAHGLSAAGLFILCG
QLYERLHTRDMREMGGLWSRLKFLPALSLFFAVATLGMPGTGNFVGEFMILFGSYQVVPV
ITVISTFGLVFASVYSLIMIQRAYYGTPKSDEPLKSMSLRELSIVMLLVVLLVLLGVYPQ
PILDTSSAAMSNIQQWFMSSAPDSIISTTRP