Protein Info for HER17_RS06360 in Pectobacterium carotovorum WPP14

Annotation: sugar ABC transporter permease

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 438 transmembrane" amino acids 45 to 63 (19 residues), see Phobius details amino acids 83 to 107 (25 residues), see Phobius details amino acids 138 to 166 (29 residues), see Phobius details amino acids 206 to 230 (25 residues), see Phobius details amino acids 241 to 264 (24 residues), see Phobius details amino acids 296 to 319 (24 residues), see Phobius details amino acids 338 to 360 (23 residues), see Phobius details amino acids 404 to 426 (23 residues), see Phobius details PF00528: BPD_transp_1" amino acids 223 to 424 (202 residues), 73.4 bits, see alignment E=1e-24

Best Hits

Swiss-Prot: 65% identical to GANP_BACSU: Putative arabinogalactan oligomer transport system permease protein GanP (ganP) from Bacillus subtilis (strain 168)

KEGG orthology group: K10109, maltose/maltodextrin transport system permease protein (inferred from 98% identity to pwa:Pecwa_1320)

Predicted SEED Role

"Maltose/maltodextrin ABC transporter, permease protein MalF" in subsystem Maltose and Maltodextrin Utilization

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (438 amino acids)

>HER17_RS06360 sugar ABC transporter permease (Pectobacterium carotovorum WPP14)
MEVDVTVNASGLTPQERGCRHARTAVLLALVPGLGQIYNRQFVKGALFFIVMACFIGIFH
DFLRNGAWGLITLGTELPRDHSIFLLAKGIISVIVAAFGVGVYYLSLRDAYVCGARRDKG
LPLNSVKKQYQMLLSEGFPYLMITPGFILLVFVVVFPIIFGFSIAFTNYNLYHTPPAKLV
DWVGMTNFINIFRLDLWRSTFFDVLQWTVIWTLIATTLQCAVGILLAILVNQKGLRFKPL
IRTILILPWAVPGFVTILVFAGMFNETFGVINNGILAALGIEPKAWMTDPFWTKTALILM
QTWLGFPFVFAMTTGVLQAIPDDLYEAATIDGASSWYKLTTITLPLVLYSIAPIIITQYT
FNFNNFNIIYLFNNGGPAVIGSNAGGTDILVSWIYKLTMSSSQYAIAASITILLSIFVVG
VALWQFRATNSFKQDNMA