Protein Info for HER17_RS05965 in Pectobacterium carotovorum WPP14

Annotation: nickel/cobalt transporter

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 367 transmembrane" amino acids 21 to 41 (21 residues), see Phobius details amino acids 76 to 98 (23 residues), see Phobius details amino acids 117 to 140 (24 residues), see Phobius details amino acids 158 to 178 (21 residues), see Phobius details amino acids 256 to 276 (21 residues), see Phobius details amino acids 282 to 310 (29 residues), see Phobius details amino acids 331 to 353 (23 residues), see Phobius details PF03824: NicO" amino acids 76 to 354 (279 residues), 127.5 bits, see alignment E=3.4e-41

Best Hits

KEGG orthology group: None (inferred from 92% identity to pct:PC1_3041)

Predicted SEED Role

"putative membrane protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (367 amino acids)

>HER17_RS05965 nickel/cobalt transporter (Pectobacterium carotovorum WPP14)
MSVNLGSLPRQRPLLSRLRDLWPLWLFLALLASALHYIVGYWPQIVLQSAIWQKSLHQQM
SHLLQMVEQQPHQAGLSLMMFSLVYGVLHAVGPGHGKVVIMTYLATHPSKLKSSLKLTLA
ASLVQGLMAVALVTVVLGILQLSSRTLHNSSFWMEKGSFVLVAGLGLLLCFRALKQLYIV
LVRQPKPATILRVTPLHVDSLNATQLNVPTDRRMALRPMPMLSSSPHQHDADCGCGHRHL
PSNEELERDSSWRTRLMIVLAMGMRPCSGAILVLLFSKVIGVYWWGVASALVMAAGTAIT
ISALAVLVFYCRRVVERLGANRASPVWQRAAFSLLAFVGGLILVGSGVLLYLSAQPAMMG
GIRPFSG