Protein Info for HER17_RS05870 in Pectobacterium carotovorum WPP14
Annotation: Ig-like domain-containing protein
These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.
Protein Families and Features
Best Hits
Predicted SEED Role
"T1SS secreted agglutinin RTX"
Sequence Analysis Tools
PaperBLAST (search for papers about homologs of this protein)
Search CDD (the Conserved Domains Database, which includes COG and superfam)
Predict protein localization: PSORTb (Gram-negative bacteria)
Predict transmembrane helices and signal peptides: Phobius
Check the current SEED with FIGfam search
Find homologs in fast.genomics or the ENIGMA genome browser
Find the best match in UniProt
Protein Sequence (4348 amino acids)
>HER17_RS05870 Ig-like domain-containing protein (Pectobacterium carotovorum WPP14) MIGVIKFVIGQVFIVALDGSQRLLVAGDRVYSGEEVVTGANGAVSITLPDGKTLDLGRDS RWSDVSNASSQANADVADDVAAIQDAIAQGADPTQVLEATAAGNDNTGEAGDGGGGHFNP AVVLNLTAEVVTTPIGYDTAGASFTDRASSVLDGVDSSTTLLAAATDSTDTTPPSVSIVI NSDGTVSFVFTTPPVGFDLSDITVTNGSVTNLVQDPNDPTRWTATLTPAANFEGEVRVSI PDGSYTNAAGIPGTGGSEAITVDTLPPVASISIDDVTSDNVINAAESGQTIAVTGQVGNE VKAGDAITVTVGTETYQTIVNTDGKTWSVNVPGAVLAANGDISASVTTRDAAGNVTTSNT SHAYGVDTVAPVASISIDNVTSDNVINASESGQTIAVSGQVGNEVKAGDAVTVKVGTETY QTTVNTDGKTWSVNVPGSVLVANSDVSATVTTRDTAGNVTTANTTHAYGVDTVAPTASIS IDDVTSDNVINATESGQTIAVTGQVDNDVKAGDAVTVNVGTETYQTTVNTDGKTWSVNVP GSVLAANSDISATVTTRDTAGNATTANTTHAYGVDTVAPVASISIDNVTSDNVINAGESG QTIAVTGKVGNEVKAGDAVTVKVGTETYQTTVNTDGKTWSVNVPGSVLAANSDVSATVTT RDTAGNATTANTSHTYGVDTVAPVASISIDNVTSDNVINASESGQTIAVTGQVGNEVKAG DAVTVKVGTETYQTTVNTDGKTWSVNVPGSVLAANGDISATVTTRDTAGNATTANTSHTY GVDTVAPVASISIDNVTSDNVINASESGQTIAVTGQVGNEVKAGDAVTLKVGTETYQTTV NTDGKTWSVNVPGAVLAANSDVSATVTTRDTAGNVTTANTSHAYSVDTVAPTASISIDNV TSDNVINAAESGQTIAVTGKVGNEVKAGDAVTVKVGTETYQTTVNTDGKTWSVNVPGSVL AANGDVSATVTTRDTAGNITTANTSHTYGVDTVAPTASITIDNVTSDNVINATESGQTIA VTGKVDNDVKAGDAITVKVGTETYQTTVNADGKTWSVNVPGSVLAANGDVSASVTTRDTA GNVTTANTSHTYGVDTVAPTASISIDNVTSDNVINASESGQTIAVTGKVDNDVKAGDAVT VKVGTETYQTTVNIDGKTWSVNVPGSVLAANGDVSATVTTRDTAGNITTANTSHTYGVDT VAPVASISIDNVTSDNVINAAESGQTIAVTGKVGNEVKAGDAITVKVGTETYQTTVNTDG KTWSVNIPGAVLAANSDVSATVTTRDTAGNATTANTSHTYGVDTVAPVASISIDNVTSDN VINASESGQTIALTGQVGNEVKVGDAVTVKVGTETYQTTVNTDGKTWSVNVPGSVLAANG DVSATVTTRDTAGNVTTANTSHTYGVDTVAPTASISIDNVTSDNVINTSESGQTIEVTGQ VGNEVKAGDAITVKVGTETYQTTVNTDGKTWSVNVPGSVLAANSDVSATVTTRDTAGNVT TANTSHTYGVDTVAPVASISIDDVTSDNVINASESGQTIAVTGQVGNEVKAGDAVTVKVG TETYQTTVNTDGKTWSVNVPGSVLAANSDVSATVTTRDTAGNATMANTSHTYGVDTVAPV ASISIDNVTSDNVINASESGQTIAVTGKVGNQVKAGDAVTVKVGTETYQTTVNTDGKTWS VNVPGSVLAANGDISASVSTRDTAGNATTANTSHTYGVDTVAPVASISIDNVTSDNVINA SESGQTIALTGQVGNEVKAGDAVTVNVGTETYQTTVNTDGKTWSVNVPGSVLAANGDVSA SVSTRDTAGNVTIANTSHAYGVDTVAPTASISIDDVTSDNVINAAESGQTIAVTGKVGNE VQAGDAVTVKVGTETYQTTVNTDGKTWSANVPGSVLAANSDVSATVTTRDTAGNVTTANT SHAYGVDTVAPTASISIDDVTSDNVINATESGQTIAVTGQVGNEVKAGDAVTVKVGTETY QTTVNTDGKTWSVNVPGSVLAANSDVSASVTTRDTAGNITTANTNHAYGVDTVAPTASIS IDNVTSDNVINAAESGQTIAVTGKVGNEVKAGDAITVKVGTETYQTTVNTDGKTWSVNVP GSVLAANGDVSATVTTRDTAGNATTANTTHAYGVDTVAPTASISIDNVTSDNVINASEYV QTIAVTGQVGNEVKAGDAVTVKVGTETYQTTVNTDGKTWSVNVPGSVLAANSDVSATVTT RDTVGNATTANTSHTYGVDTVAPTASISIDNVTSDNVINATESGQTIAVTGKVDNDVKAG DAVTVKVGTETYQTTVNSDGKTWSVNVPGSVLAANSDISASVTTRDTAGNVTTANTSHAY GVDIVAPVASISIDNVTSDNVINASESGQTIAVTGKVDNDVKAGDAVTVKVGTETYQTTV NTDGKTWSVNVPGSVLAANGDVSATVTTRDTAGNVTSANTTHAYGVDTVAPVASISIDNV TSDNVINASESGQTIAVTGKVGNEVKAGDAVTVKVGTETYQTTVNTDGKTWSVNVPGSVL AANSDVSATVTTRDTAGNVTTANTSHAYGVDTVAPIASISIDNVTSDNVINAAESGQTIA VTGKVDNDVKAGDAVTVKVGTETYQTTVNTDGKTWSVNVPGSVLAANSDVSATVTTRDTA GNATTANTSHTYGVDTVAPVASISIDNVTSDNVINASESGQTIAVTGQVGNEVKAGDAVT VKVGTETYQTAVNTDGKTWSVNVPGAVLAANGDVSATVTTRDTAGNVTTANTSHTYGVDT VAPVASISIDNVTSDNVINASESGQTIAVTGQVGNEVKAGDAVTVKVGTETYQTTVNTDG KTWSVNVPGSVLAANGDVSATVTTRDTAGNVTTANTNHAYGVDTVAPVASISVDNVTSDN VINATESGQTIAVTGKVGNEVKAGDAVTVKVGTETYQTTVNIDGKTWSVNVPGSVLAANG DVSATVTTRDTAGNVTTANTSHVYGVDTVAPVASISIDDVTSDNVINASESGQTIAVTGQ VGNEAKAGDAITVKIGTETYQTTVNSDGKTWSVNVPGSVLAANGDVSATVTTRDTAGNVT SANTTHAYGVDTVAPTASISIDNVTSDNVINATESGQTIAVTGQVGNEVKAGDAITVTVG SETYQTTVNSDGKTWSVNVPGSVLAANSDVSATVTTRDTAGNVTTANTSHTYGVDTVAPV ASISIDNVTSDNVINASESGQTIAVSGKVGNEVKAGDAITVKVGTETYQTTVNTDGKTWS VNVPGSVLAANGDVSATVTTRDTAGNVTTANTSHTYGVDTVAPTASISIDNVTSDNVINA SESGQTIAVTGKVDNDVKAGDSITVKVGTETYQTTVNTDGKTWSVNVPGSVLAANSDVSA TVTTRDTAGNATTANTSHTYGVDTVAPVASISIDNVTSDNVINASESGQTIAVTGQVGNE VKAGDAVTVKVGTETYQTTVNTDGKTWSVNVPGAVLAANGDVSATVTTRDTAGNVTTANT THAYGVDTVAPVASISIDNVTSDNVINANESRQTISVTGKVGNEVRAGDSVTVKIGTETY QTTVNTDGKTWSVNVLGTVLAANSDISASVTTRDNAGNATTANTHHAYSVDTTAPEIDIT NFAGNDGYVSQSESKNTVVSGTSNEKKVDLVFTDVNGKSVTLHDVPVTNGKWQTNVDLST LAEGKITAGATATDAAGNQAHDNSQAIMDITPPAAHNNTVSGTEDTPLHIGWSDLGVSSD TTSIVISSLPPAAAGTLYFNDNGSWKAVTAGQTFTAGNTDLRFTPASNVSGSSLGDIAYR PVDSAGNTGDKAALHIGITPVADAPVVSLSTSSVTTTPASAEVIKVNGGSTNGGFDVQNG KIVAVGNGVRVWLTEGDSVPTVVGNGKVAYYSQGNTSGDGNYSDIFVVHSNSGYFYRQSD WAADRKDHRDLDSFNGNRTNNGSNAHSDYVFVIKETGYTYNATYSTNNNANTSVNTLDGL KVNYTDSSGKSGSFTRQVSNNIEGVIYSDGSTYTPGTNSATVEKVPGQAGKQTYTLDVSA ALTDRDGSETLSGIRLTGIPTGTVLTDQINNVKYTVGADGSYLIQNAHNAQTLAGKITLE VPADAGKLNVVAQATSTEMGNHDTATGYSAEGAEQYGLSVGAAGNDTMSGTYNDDVLFGD VVSFPNTDGTGIAALQNYIGKQLGMQTGVPTTKDMHNYIAAHSSEFDLSSSKGGNDILNG GDGDDILFGQGGNDTLYGGAGNDLLYGGSGDDILIGGAGGDTLIGGAGADTFKWQAGDIG NDVIKDFNAKEGDRIDLSDLVGELEEGTDISRYIRITDNHGSPTIEVSTAGNFTADKGGT VAVSITLEHYNGALPSLESLVSKPEPSS