Protein Info for HER17_RS05510 in Pectobacterium carotovorum WPP14

Annotation: YacC family pilotin-like protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 115 signal peptide" amino acids 1 to 23 (23 residues), see Phobius details PF09691: T2SS_PulS_OutS" amino acids 18 to 106 (89 residues), 46.2 bits, see alignment E=2.2e-16

Best Hits

Swiss-Prot: 64% identical to YACC_ECOL6: Uncharacterized protein YacC (yacC) from Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)

KEGG orthology group: None (inferred from 98% identity to pwa:Pecwa_1150)

Predicted SEED Role

"Predicted chaperone lipoprotein YacC, potentially involved in protein secretion" in subsystem Polyamine Metabolism

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (115 amino acids)

>HER17_RS05510 YacC family pilotin-like protein (Pectobacterium carotovorum WPP14)
MKNSALALLLLSLMSFSSASKALNEFEAEDLADLTAIFVYLKNHCGYQDLPNEQIRRTLV
AFAQQNRWDLSNYSAYDMTAMGEDSYRDLSKIAIPTPKKCQSLARNSLGLLSYAQ