Protein Info for HER17_RS05445 in Pectobacterium carotovorum WPP14

Annotation: endonuclease/exonuclease/phosphatase family protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 262 PF03372: Exo_endo_phos" amino acids 47 to 252 (206 residues), 39.9 bits, see alignment E=2.1e-14

Best Hits

Swiss-Prot: 74% identical to Y743_ENT38: UPF0294 protein Ent638_0743 (Ent638_0743) from Enterobacter sp. (strain 638)

KEGG orthology group: None (inferred from 96% identity to eca:ECA3344)

Predicted SEED Role

"FIG00613320: hypothetical protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (262 amino acids)

>HER17_RS05445 endonuclease/exonuclease/phosphatase family protein (Pectobacterium carotovorum WPP14)
MRKKTYAMRYVAGQPAERIFPPGEMHYPGQVLPTGSLLLEGDVLRVMVWNIFKQQRMNWL
SVLQNFGKGTQLVLLQEAQSTPELIRFATTNYLSADQVPAIILPQHPSGVMTLSAAQPVY
CCPLREREPLLRLAKSSLVTVYALQNGQRLMVINIHAVNFSFGVEVYTKQLATIGEQLVH
HQGPAIMAGDFNAWSQQRINALNRFATRMGLQEVHFVDDHRRKAFGRPLDFVFYRELTVN
QSSVLVTQASDHNPLLVEFSLS