Protein Info for HER17_RS05195 in Pectobacterium carotovorum WPP14

Annotation: GPW/gp25 family protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 114 PF04965: GPW_gp25" amino acids 20 to 105 (86 residues), 60.8 bits, see alignment E=4.5e-21

Best Hits

Swiss-Prot: 60% identical to BPW_BPP2: Baseplate protein W (W) from Escherichia phage P2

KEGG orthology group: K06903, (no description) (inferred from 98% identity to pct:PC1_3188)

Predicted SEED Role

"Phage baseplate assembly protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (114 amino acids)

>HER17_RS05195 GPW/gp25 family protein (Pectobacterium carotovorum WPP14)
MTARYLGMSRDSGQTLGDIEHIRQSVRDILITPVGSRVMRRDYGSLLSALIDQPQNPAVK
LQVMAACYMALLRWEPRITLTAINLTSTFDGKLAVDITGVLADSNAVSLSVPVS