Protein Info for HER17_RS05180 in Pectobacterium carotovorum WPP14

Annotation: phage tail protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 631 signal peptide" amino acids 1 to 21 (21 residues), see Phobius details PF12571: DUF3751" amino acids 1 to 149 (149 residues), 216.9 bits, see alignment E=1.9e-68 PF03406: Phage_fiber_2" amino acids 169 to 206 (38 residues), 68.9 bits, see alignment 3.4e-23 PF07484: Collar" amino acids 502 to 549 (48 residues), 45.2 bits, see alignment 1.1e-15

Best Hits

Predicted SEED Role

"Phage tail fiber protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (631 amino acids)

>HER17_RS05180 phage tail protein (Pectobacterium carotovorum WPP14)
MSAKYLALLTHIGAAKLANATALGNRLNISQMAVGDGGGVLPTPNPAQTALINETRRAAL
NSLSVDPKNPSQIIAEQVIPENDGGWWIREIGLFDDDGNLIAIANCPETYKPQLQEGSGR
IQTVRMILIVSSTDAVTLKIDPAVVLATRSYVDSALAEHEKSRKHPDGTLTAPGFVQLSN
ATNSDSETLAATPKAVKVANDNANGRVPSGRRVNGKALTADITLGAGDVGAYTKLETDTA
VSVATTAANTAATAAANANTNANSRVPSDRRVNGKALSADIALNAADVGAYTTSETDTRV
AAAITAANNAATAAANADTNANGRVPSGRTVNGKALSADIALGAGDVGALAKNQNGADIP
NKVMFAKNASVPYLGSGWVNFGNSAGAWTTQQFVDFLNDMGAFDHLYFVCAATWSYATNR
KITNTGCGNIELSGATVEVFADRFYLRTIRVTTMATSNDPASVPGQFIYVDEGNGGRWRR
EFNTENLTPSSIGAIQGNELVGIPQPCPLVTAPEGWLACAGQSFDTSRYPVLASRYPQGR
LPDLRGEFIRGWDNGRGVDTGRGNLSSQSFSTEPHTHDGGTLGLGSGAPIYTGKGLQDGA
ATLYSQTGVNNNSGTETRPRNIAFNYIVRAA