Protein Info for HER17_RS04270 in Pectobacterium carotovorum WPP14

Annotation: ABC transporter permease

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 291 transmembrane" amino acids 21 to 43 (23 residues), see Phobius details amino acids 90 to 116 (27 residues), see Phobius details amino acids 137 to 165 (29 residues), see Phobius details amino acids 200 to 225 (26 residues), see Phobius details amino acids 256 to 278 (23 residues), see Phobius details PF12911: OppC_N" amino acids 22 to 62 (41 residues), 25.5 bits, see alignment 9.9e-10 PF00528: BPD_transp_1" amino acids 108 to 290 (183 residues), 61.5 bits, see alignment E=9.3e-21

Best Hits

KEGG orthology group: K02034, peptide/nickel transport system permease protein (inferred from 83% identity to ddd:Dda3937_02911)

Predicted SEED Role

"Dipeptide transport system permease protein DppC (TC 3.A.1.5.2)" in subsystem ABC transporter dipeptide (TC 3.A.1.5.2) (TC 3.A.1.5.2)

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (291 amino acids)

>HER17_RS04270 ABC transporter permease (Pectobacterium carotovorum WPP14)
MTDTPSASKMPSGLFARFPHANPLLIVCIGVIVIAIVLAVFADTLSPYGFAQIDLRARHM
PPFHLGTGSRHWFGTDEMGRDILSRVFYALRMSLFISLGASIISLIIGTSLGLIASFRRG
LADAIIRVAIDFQASMPFIIIALTVLAFLGNSLTLFICLLGLFGWERFARLTRTMASLEL
EKPYIAALLRNGAGGLRITIVHVFPNIFAVVLVTFTVVMPEILILESSLSFLGLGVQPPQ
VSLGSLVGAGRDYIMTAWWISIVPGMVIFILSLTISLIGDRLRDLSDPTLK