Protein Info for HER17_RS04170 in Pectobacterium carotovorum WPP14

Annotation: MFS transporter

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 519 transmembrane" amino acids 12 to 36 (25 residues), see Phobius details amino acids 48 to 66 (19 residues), see Phobius details amino acids 86 to 103 (18 residues), see Phobius details amino acids 109 to 129 (21 residues), see Phobius details amino acids 150 to 173 (24 residues), see Phobius details amino acids 179 to 201 (23 residues), see Phobius details amino acids 251 to 273 (23 residues), see Phobius details amino acids 284 to 305 (22 residues), see Phobius details amino acids 313 to 333 (21 residues), see Phobius details amino acids 339 to 358 (20 residues), see Phobius details amino acids 396 to 414 (19 residues), see Phobius details amino acids 425 to 446 (22 residues), see Phobius details PF13347: MFS_2" amino acids 13 to 451 (439 residues), 168.7 bits, see alignment E=1.7e-53 PF07690: MFS_1" amino acids 22 to 365 (344 residues), 55.9 bits, see alignment E=3.5e-19

Best Hits

KEGG orthology group: None (inferred from 99% identity to eca:ECA3560)

Predicted SEED Role

"Rhamnogalacturonide transporter RhiT" in subsystem L-rhamnose utilization

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (519 amino acids)

>HER17_RS04170 MFS transporter (Pectobacterium carotovorum WPP14)
MKTRKIGLANYLAYGSGDFLGAGTTALTAAWLLYFYTTFCGLTPIEATFIFAMARVLDAV
VSPLMGFLTDNFGSTWLGKRFGRRKFFILLGIPFVFSYSFMWVGDMSYWYYLLTYLLFDV
VYTMVLVPYETLVPEMTDDFKQKTKFSGARIALAQLSAILAAFLPGILLGYFGKDNAVSF
FYSSLVFSVICALVLTLVYFFTWERPRDQMSEASLRAEKERQSLTLGQSLKRLNVELVST
LRIRIFRQHLGMYLGGYIAQDVFNAVFTYYVVFVLMQSPTMASNLMGTMAILQFIAVIGM
IPLCIRFGPAPSYRLVVCLFGVSALSYAVLWYSGLHDTFSLLLLISALAGIGRGGINYVP
WNTYTYIADVDEVITAQRREGIFAGIMTLTRKASQAGAVMLVGVVLQLSGFVSGQSVQAP
SVSHTILMILSFGTVGVLALGFLVSLRFKLNLQTHSVLREETLKMREAGRPVPEKITPQA
RATVEMLAGMPYESLWGNNNIGYLNRHKGDKPVTHATQP