Protein Info for HER17_RS02955 in Pectobacterium carotovorum WPP14

Annotation: Co2+/Mg2+ efflux protein ApaG

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 125 PF04379: DUF525" amino acids 18 to 102 (85 residues), 123 bits, see alignment E=2.4e-40

Best Hits

Swiss-Prot: 97% identical to APAG_PECCP: Protein ApaG (apaG) from Pectobacterium carotovorum subsp. carotovorum (strain PC1)

KEGG orthology group: K06195, ApaG protein (inferred from 94% identity to pwa:Pecwa_3833)

Predicted SEED Role

"ApaG protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (125 amino acids)

>HER17_RS02955 Co2+/Mg2+ efflux protein ApaG (Pectobacterium carotovorum WPP14)
MINAPRVCVQVQSFYVESQSEPDEERFVFAYTITVRNLGRHEVQLLGRYWLITNGNGRQT
EVQGEGVVGEQPIIQPGGEFHYTSGAVIETPLGTMEGHYHMVDHQGKAFQVSIPVFRLAI
PSLIH