Protein Info for HER17_RS02460 in Pectobacterium carotovorum WPP14

Annotation: ABC transporter permease

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 254 signal peptide" amino acids 1 to 28 (28 residues), see Phobius details transmembrane" amino acids 63 to 84 (22 residues), see Phobius details amino acids 96 to 119 (24 residues), see Phobius details amino acids 125 to 144 (20 residues), see Phobius details amino acids 179 to 201 (23 residues), see Phobius details amino acids 222 to 243 (22 residues), see Phobius details PF00528: BPD_transp_1" amino acids 77 to 245 (169 residues), 68.5 bits, see alignment E=3.2e-23

Best Hits

KEGG orthology group: K02050, sulfonate/nitrate/taurine transport system permease protein (inferred from 99% identity to pct:PC1_3747)

Predicted SEED Role

"ABC-type nitrate/sulfonate/bicarbonate transport system, permease component" in subsystem Alkanesulfonate assimilation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (254 amino acids)

>HER17_RS02460 ABC transporter permease (Pectobacterium carotovorum WPP14)
MRQHWTSKLLPAVGPILLFLFWQLAVSAKWLNPILLPSPVETLSYMFQSFSDASMRTDIG
ATLYRTLAAFGFAALIGVPLGVILGSNEKIYRSLEFLIDFFRSTPSSALIPLFLLIFGIT
DANKIAISAFAAVLVILFNSAYGVMNAKKTRLMAAQVMGISRWHIFKDIMLLESLAQTFV
GLRTGVSMALVIVIVAEMFIGSETGLGHRIIDAQQVFNIRDMYASILITGALGYLLNVLF
LVVEKRIVHWSGKA