Protein Info for HER17_RS01985 in Pectobacterium carotovorum WPP14

Annotation: YggS family pyridoxal phosphate-dependent enzyme

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 270 TIGR00044: pyridoxal phosphate enzyme, YggS family" amino acids 25 to 252 (228 residues), 200.3 bits, see alignment E=1.7e-63 PF01168: Ala_racemase_N" amino acids 29 to 253 (225 residues), 76.3 bits, see alignment E=1.5e-25

Best Hits

KEGG orthology group: K06997, (no description) (inferred from 95% identity to eca:ECA4047)

Predicted SEED Role

"Hypothetical protein YggS, proline synthase co-transcribed bacterial homolog PROSC"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (270 amino acids)

>HER17_RS01985 YggS family pyridoxal phosphate-dependent enzyme (Pectobacterium carotovorum WPP14)
MPIPSDTPTRHDSHGRYPEAATVEDFQLNLAAVQMRIAAACHRVGRDPATVRLLPVSKTK
PESRLRMAHTAGCRILGENKVQEAYRKWEAMQDLADLQWSVIGHLQTNKAKLVARFATEF
QALDSLRLAEALDRRLHVEGRSLDVFVQVNTSGEASKYGLSPEDVPAFIQALPAFPTLRV
RGLMTLALFSSEAERVRQCFIRLRNLRDKLQQNAPVGIGLDELSMGMSGDFEIAIEEGAT
VVRVGQAIFGARPLPDSYYWPDETSTEASL