Protein Info for HER17_RS01465 in Pectobacterium carotovorum WPP14

Annotation: YhgN family NAAT transporter

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 197 signal peptide" amino acids 1 to 21 (21 residues), see Phobius details transmembrane" amino acids 44 to 65 (22 residues), see Phobius details amino acids 72 to 90 (19 residues), see Phobius details amino acids 107 to 128 (22 residues), see Phobius details amino acids 139 to 162 (24 residues), see Phobius details amino acids 174 to 194 (21 residues), see Phobius details PF01914: MarC" amino acids 2 to 194 (193 residues), 195.1 bits, see alignment E=9.5e-62

Best Hits

Swiss-Prot: 77% identical to YHGN_ECO57: UPF0056 inner membrane protein YhgN (yhgN) from Escherichia coli O157:H7

KEGG orthology group: None (inferred from 98% identity to eca:ECA4157)

Predicted SEED Role

"Multiple antibiotic resistance protein marC"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (197 amino acids)

>HER17_RS01465 YhgN family NAAT transporter (Pectobacterium carotovorum WPP14)
MTEMISATVLLLLIMDPLGNLPIFMSVLKHLDPKRRRVVLIREMLIALGLMLIFLFAGEH
ILAFLNLRTETVSISGGIVLFLIAIRMIFPSQEGNSSGLPAGEEPFLVPMAIPLVAGPSI
LAALMLLSHQYPNQLPHLTLALFIAWTISFIILLMSNVFLRLLGEKGVSALEKLMGLILV
MLSTQMFLDGVRAYMKL