Protein Info for HER17_RS01120 in Pectobacterium carotovorum WPP14

Annotation: DNA helicase Rep

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 673 TIGR01074: ATP-dependent DNA helicase Rep" amino acids 2 to 667 (666 residues), 1186.4 bits, see alignment E=0 PF00580: UvrD-helicase" amino acids 3 to 266 (264 residues), 313.4 bits, see alignment E=5.1e-97 PF13245: AAA_19" amino acids 7 to 249 (243 residues), 93.2 bits, see alignment E=4.6e-30 PF13361: UvrD_C" amino acids 271 to 613 (343 residues), 264.5 bits, see alignment E=5.7e-82 PF13538: UvrD_C_2" amino acids 554 to 608 (55 residues), 32.4 bits, see alignment 2e-11

Best Hits

Swiss-Prot: 87% identical to REP_ECOLI: ATP-dependent DNA helicase Rep (rep) from Escherichia coli (strain K12)

KEGG orthology group: K03656, ATP-dependent DNA helicase Rep [EC: 3.6.4.12] (inferred from 98% identity to eca:ECA4215)

MetaCyc: 87% identical to ATP-dependent DNA helicase Rep (Escherichia coli K-12 substr. MG1655)
RXN-11135 [EC: 5.6.2.4]

Predicted SEED Role

"ATP-dependent DNA helicase Rep" in subsystem DNA repair, bacterial UvrD and related helicases

Isozymes

Compare fitness of predicted isozymes for: 3.6.4.12

Use Curated BLAST to search for 3.6.4.12 or 5.6.2.4

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (673 amino acids)

>HER17_RS01120 DNA helicase Rep (Pectobacterium carotovorum WPP14)
MRLNPSQQHAVEFVTGPCLVLAGAGSGKTRVITNKIAHLIRQCGYQAKHIAAVTFTNKAA
REMKERVAQTLGRKETRGLMIATFHTLGLEIIKREYVALGMKSNFSLFDDQDQMALLKEL
TEQWLENDKVLLQQLISTISNWKNDLIDPAGAAATARSERDKLFVHCYSLYHDHLRACNV
LDFDDLILLPTLLLKQNAEVRERWQNRLRYLLVDEYQDTNTSQYELVKLLVGTRARFTVV
GDDDQSIYSWRGARPQNLVLLQQDFPALDVIKLEQNYRSSGRILKAANILIANNPHVFEK
RLFSELGYGDELKVITANNEDHEAERVVGELIAHHFIKKTQYGDYAILYRGNHQSRLFEK
MLMQNRIPYRISGGTSFFSRPEIKDLLAYLRVLTNPDDDSAFLRIVNTPKREIGPATMKK
LGEWAGQRNKGLFSASFDLGLSQSLTGRGLESLQRFTQWLAEIALLAEREPVAAVRDLIH
GLDYESWLYETSPSPKAAEMRMKNVNQLFSWMTEMLEGSDLNEPMTLTQVVTRFTLRDMM
ERGESEEELDQVQLMTLHASKGLEFPYVFLVGMEEGLLPHQSSIDEDNVDEERRLAYVGI
TRAQRELFFTLCKERRQYGELVRPEPSRFLLELPQDDVVWETERKVVSAQERMQKGQTNV
ANIRAMLAKAKGG