Protein Info for HER17_RS00690 in Pectobacterium carotovorum WPP14

Annotation: DUF4132 domain-containing protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1239 PF13646: HEAT_2" amino acids 618 to 673 (56 residues), 28.3 bits, see alignment (E = 1.7e-10) PF13569: DUF4132" amino acids 960 to 1106 (147 residues), 113 bits, see alignment E=1.7e-36

Best Hits

KEGG orthology group: None (inferred from 85% identity to pwa:Pecwa_0131)

Predicted SEED Role

"FIG00949336: hypothetical protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1239 amino acids)

>HER17_RS00690 DUF4132 domain-containing protein (Pectobacterium carotovorum WPP14)
MPIFGDKKVTPTENLLQESLLPLAELDKTLPKKIFHYVMTGTEPEVLYALNQLDSDKTIV
LLDKPGSVDWYYVQNNSFNSSEYSKIIRQARNARYKLYSMVGQGLTNEQTVRFAKVLAAA
CQNKNIKIITDEVPNWMVYLLCDALVTTLKSTSNEKLKLKHRADWSVQLLADLVASEQHD
EKGENILFAIFDRKEIGEYYSSELALFFELPDLQTYIESHAQFVRTTLVDKLSALGLIQF
LKYLSDREVLRVFFSDVIVKLAMDQKKTVRSEAEPLLNTLPANDVKKYLSDILFNGTPKQ
RSQAADLFARQGENKDILEQALQLEKSKAVIKSIESAMTRFDVVDTAQDMALPELPELTL
LADTPLPESAKDILVENLIEMVETARINAEKEIEQNKSNAYKYKWAQDHYAKLKKLNAEH
CRALVDKLNHGNHKLSSEDTSIIKYKKRISNLPEFTFYHAMRIIFGNMYAHFNLSTARIE
HEAPTHIVAGLELRQIEGVLQALACPEPARIAASLCLESYNHGLRLFPKPEQLWPFFSQH
PDYIAEALGLLPNKSDNQYRKFELGQAFELLDKFPAIPAQFIPRIMELALGENKTFRVSA
QKLLEKLPNVHVNAQESLHSAKQEIRITTIEWLARIKHKDSIAPLYALLKKEKRETVRAA
LLAALEQFGEDISPYLSEKVLRDEALKGLKASPPASMSWFDYNAIPSLKWENGKAVDADI
IKWWIILAVKLKMPAGNTLLQRYVGLLAKESQHKLGHFVLHSFITQDVKNPSLEDAMLEA
HKDAPARLKTYQYYLERYPEYYQKYEHYTLEQAAEEIKNEVLRRYLGSAIADKGMLALIG
RIEGHVAVSALRNYTRDHYQRRSQIEAMISAMAISDDPLIIQLLLSLSRRYRTAAIQEKA
RELVKDIADRNGWSADELADRTIPTAGLDETGTLVLEYGERIFTARMDSKQKLVLLNPEG
KEIKALPAARKTDNEEQIKEAKKLFSSSKKELKQVIDLQTARLYESMCAQRQWSSEDWQT
YIMGHPVMRPLIERLVWQEVKGEQVLNTFRPTDDGCLLNLEDDEVELSDGTMIQLAHAAI
VDNETREAWLAHFKDYKVTFLFSQMVNMLPELDRKRVEIEDKKGWLTDTFTLRGVLTKMG
YQRAPAEDGGSFTHYYKHFSSLNVYVNIGFSGSYVPEENIPAVLFDLSFEKNQQNYWDRN
NLALQDVPPILLAESYADYLKAAEACSGYDADWESKTPW