Protein Info for HER17_RS00490 in Pectobacterium carotovorum WPP14

Annotation: aspartate 1-decarboxylase autocleavage activator PanM

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 148 PF12568: PanZ" amino acids 2 to 129 (128 residues), 195 bits, see alignment E=4.6e-62 PF00583: Acetyltransf_1" amino acids 21 to 107 (87 residues), 33.9 bits, see alignment E=5.1e-12 PF13508: Acetyltransf_7" amino acids 38 to 103 (66 residues), 27.9 bits, see alignment E=3.8e-10

Best Hits

KEGG orthology group: None (inferred from 93% identity to eca:ECA4342)

Predicted SEED Role

"probable acetyltransferase YPO3809"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (148 amino acids)

>HER17_RS00490 aspartate 1-decarboxylase autocleavage activator PanM (Pectobacterium carotovorum WPP14)
MKLTVECLTRFSPQDKIDLAKIWPHQNIDLLEEELTPDRRLFAARFNDRLLGGMLVEIEG
EYAELSDLMVREVTRRRGVGKLLIDEARHQLPEVKEWWLATADHAAIKEEVLARFMVSCG
FSPVSGGWRYIRRKETPLILDQLNPEKP