Protein Info for HER17_RS00115 in Pectobacterium carotovorum WPP14

Annotation: ABC transporter permease

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 302 transmembrane" amino acids 31 to 52 (22 residues), see Phobius details amino acids 103 to 129 (27 residues), see Phobius details amino acids 141 to 161 (21 residues), see Phobius details amino acids 167 to 184 (18 residues), see Phobius details amino acids 210 to 234 (25 residues), see Phobius details amino acids 240 to 247 (8 residues), see Phobius details amino acids 270 to 291 (22 residues), see Phobius details PF12911: OppC_N" amino acids 26 to 65 (40 residues), 33.1 bits, see alignment 4.1e-12 PF00528: BPD_transp_1" amino acids 120 to 301 (182 residues), 106.7 bits, see alignment E=1.3e-34

Best Hits

Swiss-Prot: 40% identical to DPPC_HAEIN: Dipeptide transport system permease protein DppC (dppC) from Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)

KEGG orthology group: K02034, peptide/nickel transport system permease protein (inferred from 96% identity to pct:PC1_0020)

Predicted SEED Role

"Dipeptide transport system permease protein DppC (TC 3.A.1.5.2)" in subsystem ABC transporter dipeptide (TC 3.A.1.5.2) (TC 3.A.1.5.2)

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (302 amino acids)

>HER17_RS00115 ABC transporter permease (Pectobacterium carotovorum WPP14)
MTGNTIHQPAAVQKTTHPVMRVIVALINDRLALCGLIMLAIFVLLALLAPLLSPQNPYDL
MQLDIMDGRLAPGAQSMAGMTYWLGTDDQGRDLFSAILYGTRISLIVGFSSAVLALLIGA
SLGLISAYVGGKTDATIMRIVDIQLSFPPILIALILLAVLGQGVDKIIMALVVTQWAYYA
RTIRGSALVERRRSYVDAARSMALSNRRILFRHILPNCLAPLIVVATMRIAYAIMLEATL
SFLGIGLPVTEPSLGLLISNGFEYLMSGDYWISFFPGLTLLLLIVAINLVGDALRDILNP
RN