Protein Info for HEPCGN_21805 in Escherichia coli ECOR38

Annotation: ATP-binding protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 404 PF13476: AAA_23" amino acids 7 to 200 (194 residues), 61.3 bits, see alignment E=4.1e-20 PF02463: SMC_N" amino acids 26 to 360 (335 residues), 45.5 bits, see alignment E=1.3e-15 PF13304: AAA_21" amino acids 179 to 354 (176 residues), 62.5 bits, see alignment E=1.3e-20

Best Hits

KEGG orthology group: None (inferred from 98% identity to ecm:EcSMS35_2489)

Predicted SEED Role

"ATP binding protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (404 amino acids)

>HEPCGN_21805 ATP-binding protein (Escherichia coli ECOR38)
MMNIRTLKLTNLGRFEELDVHLAPVEEFKSNVTVFIGNNGAGKTSILKSLATSLSWFVAR
VRTEKGNGSPIPEDAILNGRSSATIELQVLNTHPATEVATPYRWLLARTASGKKSTTASS
LQEASQLAAFYRDQYTQNSGASFPLIAFYPVERVVLDVPLKIKERHNFLQLDGYDNALNQ
GIDFRRFFEWFRNREDAENESGLPQDVLDKLSTRIDLDNAVLNALTALMASSRDRQLTAV
RTAISRFMPGFSNLRVRRKPRLHMSIDKNGQTLNVLQLSQGEKSLMALVGDIARRLAMMN
PMLENPLNGEGIVLIDEVDMHLHPTWQRTIIQRLTTTFPHCQFVLTTHSPLVISDCKDVL
VYSLDDGELTQLPSLYGQDANTVLLNVMDTDIRNATVGESKTTG