Protein Info for HEPCGN_19170 in Escherichia coli ECOR38

Name: yqcE
Annotation: Inner membrane protein YqcE

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 289 transmembrane" amino acids 7 to 26 (20 residues), see Phobius details amino acids 37 to 56 (20 residues), see Phobius details amino acids 78 to 104 (27 residues), see Phobius details amino acids 115 to 136 (22 residues), see Phobius details amino acids 156 to 174 (19 residues), see Phobius details amino acids 180 to 202 (23 residues), see Phobius details amino acids 214 to 238 (25 residues), see Phobius details amino acids 254 to 273 (20 residues), see Phobius details PF07690: MFS_1" amino acids 1 to 197 (197 residues), 36.8 bits, see alignment E=1.1e-13

Best Hits

Predicted SEED Role

"Inner membrane protein YqcE"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (289 amino acids)

>HEPCGN_19170 Inner membrane protein YqcE (Escherichia coli ECOR38)
MGWMEGLRGVGVMSLAVFTMWVFSRFAPDDSASLKTVIIIYSVVYILLGILCWFFVSDNN
NLRNTNNEEKQSFQLSDILAVLRISTTWYCSMVIFGVFTIYAILSYSTNYLTEMYGMSLV
AASYMGIVINKIFRALCGPLGGIITTYSKVKSPTRVIQILSVLGLLALTALLVTNSNPQS
VAMGIGLILLLGFTCYASRGLYWACPGEARTPSYIMGTTVGICSVIGFLPDVFVYPIIGY
WQDTLPAAEAYRNMWLMGMAALAMVIVFTFLLFQKIRTADSAPAMASSK