Protein Info for HEPCGN_06700 in Escherichia coli ECOR38

Name: ybaT
Annotation: Inner membrane transport protein YbaT

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 430 transmembrane" amino acids 12 to 36 (25 residues), see Phobius details amino acids 47 to 65 (19 residues), see Phobius details amino acids 87 to 110 (24 residues), see Phobius details amino acids 130 to 148 (19 residues), see Phobius details amino acids 158 to 179 (22 residues), see Phobius details amino acids 192 to 213 (22 residues), see Phobius details amino acids 229 to 249 (21 residues), see Phobius details amino acids 277 to 303 (27 residues), see Phobius details amino acids 325 to 343 (19 residues), see Phobius details amino acids 349 to 368 (20 residues), see Phobius details amino acids 380 to 400 (21 residues), see Phobius details amino acids 406 to 424 (19 residues), see Phobius details PF13520: AA_permease_2" amino acids 13 to 397 (385 residues), 108.3 bits, see alignment E=4.5e-35 PF00324: AA_permease" amino acids 18 to 399 (382 residues), 86.6 bits, see alignment E=1.6e-28

Best Hits

Swiss-Prot: 100% identical to YBAT_ECOLI: Inner membrane transport protein YbaT (ybaT) from Escherichia coli (strain K12)

KEGG orthology group: None (inferred from 100% identity to eco:b0486)

Predicted SEED Role

"Inner membrane transport protein YbaT"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (430 amino acids)

>HEPCGN_06700 Inner membrane transport protein YbaT (Escherichia coli ECOR38)
MMNTEGNNGNKPLGLWNVVSIGIGAMVGAGIFALLGQAALLMEASTWVAFAFGGIVAMFS
GYAYARLGASYPSNGGIIDFFRRGLGNGVFSLALSLLYLLTLAVSIAMVARAFGAYAVQF
LHEGSQEEHLILLYALGIIAVMTLFNSLSNHAVGRLEVILVGIKMMILLLLIIAGVWSLQ
PAHISVSAPPSSGAFFSCIGITFLAYAGFGMMANAADKVKDPQVIMPRAFLVAIGVTTLL
YISLALVLLSDVSALELEKYADTAVAQAASPLLGHVGYVIVVIGALLATASAINANLFAV
FNIMDNMGSERELPKLMNKSLWRQSTWGNIIVVVLIMLMTAALNLGSLASVASATFLICY
LAVFVVAIRLRHDIHASLPILIVGTLVMLLVIVGFIYSLWSQGSRALIWIIGAILLSLIV
AMVMKRNKTV