Protein Info for HEPCGN_05260 in Escherichia coli ECOR38

Name: ydjX
Annotation: TVP38/TMEM64 family membrane protein YdjX

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 236 signal peptide" amino acids 1 to 6 (6 residues), see Phobius details transmembrane" amino acids 7 to 26 (20 residues), see Phobius details amino acids 47 to 76 (30 residues), see Phobius details amino acids 82 to 103 (22 residues), see Phobius details amino acids 125 to 144 (20 residues), see Phobius details amino acids 156 to 180 (25 residues), see Phobius details amino acids 190 to 213 (24 residues), see Phobius details PF09335: VTT_dom" amino acids 63 to 179 (117 residues), 93 bits, see alignment E=1e-30

Best Hits

Swiss-Prot: 98% identical to YDJX_ECOLI: TVP38/TMEM64 family membrane protein YdjX (ydjX) from Escherichia coli (strain K12)

KEGG orthology group: None (inferred from 98% identity to eco:b1750)

Predicted SEED Role

"DedA family inner membrane protein YdjX"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (236 amino acids)

>HEPCGN_05260 TVP38/TMEM64 family membrane protein YdjX (Escherichia coli ECOR38)
MNAERKFLFACLIFALLIYAIHAFGLFDLLTDLPHLQTLIRQSGLFGYSLYILLFIIATL
FLLPGSILVIAGGIVFGPFLGTLLSLIAATLASSCSFLLARWLGRDLLLKYVGHSHTFKA
IEKGIARNGIDFLILTRLIPLFPYNIQNYAYGLTTIAFWPYTLISALTTLPGIVIYTVMA
SDLANEGITLRFILQLCLAGLALFILVQLAKLYARHKHVDLSASRRSPLTHPKNEG