Protein Info for GFF979 in Variovorax sp. SCN45

Annotation: 2-oxoglutarate dehydrogenase E1 component (EC 1.2.4.2)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 850 900 958 PF16078: 2-oxogl_dehyd_N" amino acids 17 to 54 (38 residues), 60.5 bits, see alignment (E = 1.8e-20) TIGR00239: oxoglutarate dehydrogenase (succinyl-transferring), E1 component" amino acids 19 to 946 (928 residues), 1200.1 bits, see alignment E=0 PF00676: E1_dh" amino acids 225 to 510 (286 residues), 135.4 bits, see alignment E=4.3e-43 PF02779: Transket_pyr" amino acids 605 to 801 (197 residues), 163.9 bits, see alignment E=5.8e-52 PF16870: OxoGdeHyase_C" amino acids 807 to 948 (142 residues), 180.6 bits, see alignment E=3.2e-57

Best Hits

Swiss-Prot: 76% identical to ODO1_CUPNH: 2-oxoglutarate dehydrogenase E1 component (odhA) from Cupriavidus necator (strain ATCC 17699 / H16 / DSM 428 / Stanier 337)

KEGG orthology group: K00164, 2-oxoglutarate dehydrogenase E1 component [EC: 1.2.4.2] (inferred from 86% identity to aav:Aave_3248)

Predicted SEED Role

"2-oxoglutarate dehydrogenase E1 component (EC 1.2.4.2)" in subsystem TCA Cycle (EC 1.2.4.2)

MetaCyc Pathways

KEGG Metabolic Maps

Isozymes

No predicted isozymes

Use Curated BLAST to search for 1.2.4.2

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (958 amino acids)

>GFF979 2-oxoglutarate dehydrogenase E1 component (EC 1.2.4.2) (Variovorax sp. SCN45)
MSDSSTPSAYTAYQGNTYLFGGNAPYVEEMYENYLSNPGSVPDNWRSYFDALQNVPAADG
TNTRDVPHLPVINAFAERAKQGTTKVVQASGADSELGRKRTSVQQLIAAYRNVGARWADL
DPLKRAERPAIPELEPSFYGFADADLETVFNTSNTFFGKETMSLRDLLNALRETYCGTMG
AEYMYTTDQNHKRWWQQRLESARTNPKLSAEQKKHVLNRLTAAEGLERFLHTKYVGQKRF
SLEGGESFIVAMDELINQAGVKGVQEIVIGMAHRGRLNVLVNSLGKMPADLFAEFDHTAP
EDLPSGDVKYHQGFSSDVTTPGGPVHLSLAFNPSHLEIVNPVVEGSVRARMDRRGDPLGK
QVLPVIVHGDAAFAGQGVVMETLALAETRGYSTGGTVHIVINNQIGFTTSDPRDSRSTLY
CSDIVKMIEAPVLHVNGDDPEAVVLATQIALDFRMEFQKDVVVDIICFRKLGHNEQDTPS
LTQPLMYKKIAQHPGTRKLYADKLAAQGLGDTLGDDMVKAQRAAFDEGKNTVDPVLTNFK
SKYAVDWSPYLNKKWTDAGDTAIPSSEWKRLAEKITAVPQGFTVHPLVKKVLDDRAAMGR
GDVNIDWGMGEHMAFASLVASGYPVRLSGEDSGRGTFTHRHAVLHDQNREKFDTGTYTPL
QNVADNQAPFVVIDSILSEEAVLAFEYGYASNDPNTLVIWEAQFGDFVNGAQVVIDQFIA
SGEVKWGRVNGLTMMLPHGYEGQGPEHSSARLERFMQLSADTNMQVVQPTTASQIFHVLR
RQMVRNLRKPLIILTPKSLLRNKDATSPLSEFTKGSFQTVIPDSKGLKADKVKRLIACSG
KVYYDLAKKREELGNEDVAIIRVEQLYPFPHKAFAAEIKKYPNLVDVVWCQDEPQNQGAW
FFVQHYIHENMQDGQKLGYSGRAASASPAVGYSHLHQEQQKALVDGAFGKLKGFVLTK