Protein Info for GFF945 in Sphingobium sp. HT1-2

Annotation: Protein containing domains DUF404, DUF407, DUF403

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 827 PF14403: CP_ATPgrasp_2" amino acids 90 to 470 (381 residues), 427.6 bits, see alignment E=6.2e-132 PF04174: CP_ATPgrasp_1" amino acids 90 to 424 (335 residues), 286 bits, see alignment E=5.5e-89 PF04168: Alpha-E" amino acids 518 to 811 (294 residues), 214.1 bits, see alignment E=5.4e-67

Best Hits

KEGG orthology group: None (inferred from 80% identity to sjp:SJA_C1-31440)

Predicted SEED Role

"Protein containing domains DUF404, DUF407, DUF403"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (827 amino acids)

>GFF945 Protein containing domains DUF404, DUF407, DUF403 (Sphingobium sp. HT1-2)
MTDSPVLPGLEASGWAGDYLARASGGDLFAGAPAEMAPRWRAMLDRLSEQGQGDPATLAG
NVERQAQDLGLAFRLTGDEQERPWPLSPIPMLIGAGEWTRIEQGLMQRAELLERVISDIY
STQSLVREGKLPAAVVTGSPHYWRVMTGAAPPRGHYLHFYAADLGRGPDGEWRVLADRVR
TPVGVGYALENRLALSRATGDLLGAMNTRRLAPFFADLRRGLAVDCQRADPRIGLLTPGR
FNQSYAEQAHLARYLGLMLVEGDDLIVSDGRLFVRTIEGLKRIDGLWRWMDSRFLDPLAF
DGESRIGVPDLYDACARGGLMVSNWPGAGVIEARAFAAFLPQLAKALLSTELLLPNIATW
WCGQERERGHVTGHLDELLVASAFDRDAAGLGSARSVQGSTLDADQRMTLLEAMARRPMD
YVGQEVVKLSTTPAIVGGRLTPLPFTLRVFVARDGLGQWRIMPGAFARLAAHGDIRAALM
GEGDMSADMCVIDSQPVPPDTLLGDGGAPAIRRIGGLLPTKAADNLYWLGRYIERTEMTL
RVIRAVIGESIEVDMGPSSDSPTMARLAGQLALWGATGNAAQPVGALCAQALGDARQPGS
VRALMGVVANIGEGLRDRLATDFWRLVRLPLPAFDGAVTETLLDAASRMIERISALSGLA
AENMARTEGWRFHDMGRRIERAITGCRLTLLLGSDWASADDLTVLLDLHDSQISYRNRYL
TGPSLPPVRDLVALEPQNPRSIAYQAQRIAEHVAALPTLRGDGMPEEPQRLAGALAATLA
PLTGDMLTMAALTDIESRLLALSDAIGQRYFLQVRKTEKVEGAELLS