Protein Info for PS417_00475 in Pseudomonas simiae WCS417

Annotation: membrane protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 409 signal peptide" amino acids 1 to 20 (20 residues), see Phobius details transmembrane" amino acids 41 to 62 (22 residues), see Phobius details amino acids 140 to 160 (21 residues), see Phobius details amino acids 172 to 193 (22 residues), see Phobius details amino acids 204 to 226 (23 residues), see Phobius details amino acids 229 to 230 (2 residues), see Phobius details amino acids 233 to 255 (23 residues), see Phobius details amino acids 278 to 297 (20 residues), see Phobius details amino acids 352 to 374 (23 residues), see Phobius details amino acids 386 to 408 (23 residues), see Phobius details PF07670: Gate" amino acids 51 to 159 (109 residues), 45.1 bits, see alignment E=6.3e-16 amino acids 276 to 379 (104 residues), 44.4 bits, see alignment E=1e-15

Best Hits

KEGG orthology group: None (inferred from 100% identity to pfs:PFLU0094)

Predicted SEED Role

"Fused spore maturation proteins A and B"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A1N7U517 at UniProt or InterPro

Protein Sequence (409 amino acids)

>PS417_00475 membrane protein (Pseudomonas simiae WCS417)
MLNGLWLGFFVVAMVSALAQWLVGGNAGIFAAMVESIFAMAKLSVEVMVLLFGTLTLWLG
FLRIAEKAGIVDWLAKALGPLFRRLMPEVPAGHPAIGLITLNFAANGLGLDNAATPIGLK
AMKALQELNPIPNTASNAQILFLVLNASSLTLLPVTIFMYRAQQGAADPTLVFLPILLAT
SASTLVGLLSVAIMQRLRLWDPVVLAYLIPGALVLGGFMALLATLSATALAGLSSILGNL
TLFGLIMLFLVIGALRKVKVYEAFVEGAKEGFDVAKNLLPYLVAMLCAVGVLRASGALDF
GLEGIRHVVAWTGMDTRFVDALPTAMVKPFSGSAARAMLIETMQTQGVDSFPALVAATIQ
GSTETTFYVLAVYFGSVGIQRARHAVGCALLAEFAGVVAAIAVCYWFFG