Protein Info for PS417_04675 in Pseudomonas simiae WCS417

Annotation: deoxyribonuclease

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 499 transmembrane" amino acids 15 to 37 (23 residues), see Phobius details amino acids 263 to 281 (19 residues), see Phobius details amino acids 292 to 314 (23 residues), see Phobius details PF02743: dCache_1" amino acids 42 to 278 (237 residues), 56.2 bits, see alignment E=3.5e-19 TIGR00254: diguanylate cyclase (GGDEF) domain" amino acids 329 to 492 (164 residues), 167.8 bits, see alignment E=8.7e-54 PF00990: GGDEF" amino acids 332 to 490 (159 residues), 164.4 bits, see alignment E=1.9e-52

Best Hits

KEGG orthology group: None (inferred from 88% identity to pfs:PFLU0956)

Predicted SEED Role

"GGDEF domain protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See U1T2A5 at UniProt or InterPro

Protein Sequence (499 amino acids)

>PS417_04675 deoxyribonuclease (Pseudomonas simiae WCS417)
MSPPRVRSLPARPELFLILGSGLTVVLIVVIVAVLLIREHASTLQAATRSTTNIAQLINA
DVLRNVELYDLALKGLIAARQREDLAQVSANIQHLVQFDLSTAAPFKGEVLLLDANGTVI
ADSSTLQPTPRNFANRDYFQVHTKDAQAGLYISRPFKIHCDCDQVWRMAFSRRVSGPNGE
FAGVAVATMRLAYFDQLFNTVTIGNGSSVNLLNNQGFLLAQQPLLESDMIDKDLSERPNF
KRILREGSGTFQAISAISGTERLYTFTNVGELPLIVVVALSSQDVFARWQRAALLTSGAT
GILCIGLLWLTWMLRRELRRRYRAERVLSELAAVDALTGLANRRILDERLRLEWDRAQRS
LEPLTVLMIDVDHFKAFNDRHGHHGGDAALRTVAQVIGANIRRPADLAARYGGEEFAVVL
PHTDAKGAWVIAEHIRSSIEHLPRVAGDAQPITASIGMSTWDKRSRLSLEALLLSADQAL
YEAKHSGRNRIVEAQTPSL