Protein Info for GFF917 in Variovorax sp. SCN45
Annotation: hypothetical protein
These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.
Protein Families and Features
Best Hits
KEGG orthology group: K10852, isopenicillin-N N-acyltransferase [EC: 2.3.1.164] (inferred from 47% identity to bra:BRADO2616)Predicted SEED Role
No annotation
MetaCyc Pathways
- penicillin K biosynthesis (1/1 steps found)
- penicillin G and penicillin V biosynthesis (3/4 steps found)
- superpathway of penicillin, cephalosporin and cephamycin biosynthesis (1/10 steps found)
KEGG Metabolic Maps
Isozymes
Compare fitness of predicted isozymes for: 2.3.1.164
Use Curated BLAST to search for 2.3.1.164
Sequence Analysis Tools
PaperBLAST (search for papers about homologs of this protein)
Search CDD (the Conserved Domains Database, which includes COG and superfam)
Predict protein localization: PSORTb (Gram-negative bacteria)
Predict transmembrane helices and signal peptides: Phobius
Check the current SEED with FIGfam search
Find homologs in fast.genomics or the ENIGMA genome browser
Find the best match in UniProt
Protein Sequence (366 amino acids)
>GFF917 hypothetical protein (Variovorax sp. SCN45) MDIESFPLYDIEGDAYQRGQQYGRAAGDRIDLSLRTYRAAFERVGLGWDRTRALARRFMP LVAAFDAGMLREIEGVAEGAGVPAEDIVALNARSEMLYAFQQLEATEPPDGCTGVVVMPS ASRSGKLIHAQNWDWRVESLELGVVLRIQPDEGPSMLTFAEAGTLARAGLNSAGIAVTGN FIKADNDGKQQGVPLALIRRGILQSTLYANALGVVCRTARSISNNMIITHAEGEAVSLET CPEQVFWQQPEAGVLVHANHFKTPAALARVVDRSLETTPDSLYRDRRVTEALQQQCKRAG DLTEQDVLDALQDRFGAPRAVCRSPSAGPGGASSATVATIVMDPAARKMRIAPAPFKAHR FTEYSL