Protein Info for GFF912 in Xanthobacter sp. DMC5

Annotation: putative MFS-type transporter YcaD

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 390 transmembrane" amino acids 23 to 44 (22 residues), see Phobius details amino acids 56 to 75 (20 residues), see Phobius details amino acids 87 to 112 (26 residues), see Phobius details amino acids 115 to 135 (21 residues), see Phobius details amino acids 147 to 167 (21 residues), see Phobius details amino acids 173 to 195 (23 residues), see Phobius details amino acids 216 to 240 (25 residues), see Phobius details amino acids 252 to 271 (20 residues), see Phobius details amino acids 278 to 297 (20 residues), see Phobius details amino acids 303 to 326 (24 residues), see Phobius details amino acids 337 to 360 (24 residues), see Phobius details amino acids 367 to 386 (20 residues), see Phobius details PF07690: MFS_1" amino acids 27 to 244 (218 residues), 57.8 bits, see alignment E=9.3e-20 amino acids 219 to 385 (167 residues), 37.7 bits, see alignment E=1.2e-13

Best Hits

KEGG orthology group: None (inferred from 86% identity to xau:Xaut_4144)

Predicted SEED Role

"transporter, MFS superfamily"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (390 amino acids)

>GFF912 putative MFS-type transporter YcaD (Xanthobacter sp. DMC5)
VSHDSIEPATAALPEASTLVARGAVIATAMVFGLTYSLTAPLIAFDLAARGLGETVIGAN
AAMHAVGVLVTALILPRMVALLGPRRLILLSIAVSAVALAAFPIMPAIWLWFVLRLFLGM
AAEALFVTSETWINALSTENTRARSMAAYTAAMSVGLALGPLILSLVGTEGALPYLLGAG
AALVAALFVASPRVIAPHFDEPTISNPVRFVRLAPLALSATMLNAAIETAGLSFLALYAV
GLGWAEEHATRLMSVMMVGAILLQLPIGWLGDTMDRRTLVILLAVISAVGAAIWPLALGN
AVATYALLFIWGGAFVGIYTIMITLVGSRFKGGDLVGIYAVSGLFWGLGALVGPLGAGFA
MQVHPHGLALFATLACTLFAVAAWRLRGSA