Protein Info for GFF902 in Hydrogenophaga sp. GW460-11-11-14-LB1

Annotation: Butyryl-CoA dehydrogenase (EC 1.3.8.1)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 390 PF02771: Acyl-CoA_dh_N" amino acids 12 to 124 (113 residues), 77.3 bits, see alignment E=2.5e-25 PF02770: Acyl-CoA_dh_M" amino acids 129 to 228 (100 residues), 84.7 bits, see alignment E=8e-28 PF00441: Acyl-CoA_dh_1" amino acids 240 to 386 (147 residues), 158.2 bits, see alignment E=3.4e-50 PF08028: Acyl-CoA_dh_2" amino acids 255 to 369 (115 residues), 58.6 bits, see alignment E=1.6e-19

Best Hits

KEGG orthology group: None (inferred from 89% identity to axy:AXYL_06717)

Predicted SEED Role

"Butyryl-CoA dehydrogenase (EC 1.3.8.1)" (EC 1.3.8.1)

MetaCyc Pathways

Isozymes

Compare fitness of predicted isozymes for: 1.3.8.1

Use Curated BLAST to search for 1.3.8.1

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (390 amino acids)

>GFF902 Butyryl-CoA dehydrogenase (EC 1.3.8.1) (Hydrogenophaga sp. GW460-11-11-14-LB1)
MARQDWNTFGFTEQQCMIRDSVLDLLQAKLPVEKIRELDRAGEFPFEAYQALADAGWMSL
PFSEAEGGSGGSHKDLAVLVEAMAYHYASVATAYLTAVIYAGQHIALHGSEQLKRTYLPG
IMDGRLRMAIALTEPGAGSDAAAIATKAERRGERYVVNGQKLYITCAHVANHLVTAVRTG
PSGDPQFAGHKGISMLLIPADAPGVTIRMLDTLGRRTTRANEVFFDNVEVPAENLIGAEN
KGWRGLMKCLNMERLCLAAAGAGNTQHVIDYAKDYATQRVQFGQPITQFQAIAHKFADMR
IKAETTRLMTYRVAEMLDAGVEPRIETAMAKVVSTDNDFDCANLGMQIMGGAGYMMEHDM
QRFFRDSRIGPVGGGANEIQRNIIAQLMGL