Protein Info for PS417_04565 in Pseudomonas simiae WCS417

Annotation: cell envelope biogenesis protein OmpA

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 257 signal peptide" amino acids 1 to 22 (22 residues), see Phobius details transmembrane" amino acids 45 to 63 (19 residues), see Phobius details amino acids 70 to 88 (19 residues), see Phobius details PF00691: OmpA" amino acids 123 to 218 (96 residues), 73.2 bits, see alignment E=9.5e-25

Best Hits

KEGG orthology group: None (inferred from 99% identity to pfs:PFLU0931)

Predicted SEED Role

"Outer membrane protein assembly factor YaeT precursor"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A1N7UG64 at UniProt or InterPro

Protein Sequence (257 amino acids)

>PS417_04565 cell envelope biogenesis protein OmpA (Pseudomonas simiae WCS417)
MFTSRRLLVVATCVALLSGCASPNPYDGSSQGQASNESGGMSKTAKYGGLGALAGALAGA
AIDHNNRGKGALIGAVVAGAGAAGYGYYADQQEKKLRESMANTGVEVQRQGDQIKLIMPG
NITFATNSDAISSSFYLPLNNLANSLKQFNQNTIQIVGYTDSTGSRQLNMDLSQRRAQSV
ANYLTSQGVNGANLSARGAGPDNPIASNADVNGRAQNRRVEVNLGPIPGQQYGQPGAQQQ
APQQNNQFQGNPYSQYQ