Protein Info for GFF885 in Variovorax sp. SCN45

Annotation: Transcriptional regulator, LysR family

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 305 transmembrane" amino acids 101 to 121 (21 residues), see Phobius details amino acids 231 to 253 (23 residues), see Phobius details PF00126: HTH_1" amino acids 10 to 67 (58 residues), 78.6 bits, see alignment E=2.7e-26 PF03466: LysR_substrate" amino acids 95 to 298 (204 residues), 155.2 bits, see alignment E=1.6e-49

Best Hits

KEGG orthology group: None (inferred from 92% identity to vpe:Varpa_3824)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (305 amino acids)

>GFF885 Transcriptional regulator, LysR family (Variovorax sp. SCN45)
MRKTPDLSTRQLRAFLALAEHRNFTRAAQTSHLSQPAFSALIRTLEDAVGTRLFDRDTRS
VQLTPEGLLFEGSARRLLDDMGNAMVDLADHVERRKGRVRVAALPSLAAGWLPAVFAEFM
QAWPGIRVDLDDALSDACIALVRAGQADFALAASGAEAAAGSDLRARKLCSDRFHLVCRA
DHPLAREPRLTVKKIAPYPFIQMARNSSVRQALDAALHPQRLNAVFEVEHLATVMGLVEA
GLGISVVPALTLFHFQRETLVTRALPLPALTRTLYLVQRREGSLSVAAQTLYDLIVARLG
SLRLD