Protein Info for GFF878 in Sphingobium sp. HT1-2

Annotation: Aerobic cobaltochelatase CobN subunit (EC 6.6.1.2)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1239 transmembrane" amino acids 209 to 220 (12 residues), see Phobius details TIGR02257: cobaltochelatase, CobN subunit" amino acids 1 to 1236 (1236 residues), 1558.2 bits, see alignment E=0 PF02514: CobN-Mg_chel" amino acids 140 to 1227 (1088 residues), 1240.8 bits, see alignment E=0

Best Hits

Predicted SEED Role

"CobN component of cobalt chelatase involved in B12 biosynthesis" in subsystem Coenzyme B12 biosynthesis

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1239 amino acids)

>GFF878 Aerobic cobaltochelatase CobN subunit (EC 6.6.1.2) (Sphingobium sp. HT1-2)
MHLLSATPGTISDGEEAIDLDQPPGDIVILTVADSDLACFAAAAARLPDDAPSVRLANLL
QLKHPYSVDLYVEKVIAKARFVCVILLGGKSYWPYGVDEIAQVARERGIAFAAIADGREG
DPALDLASTVPAAMREQLRDYLRQGGTANALSFLRCAARLTGADVGEPDHPLPIADAGLY
LPGHDRPGVAELRATWVEGRPVALLIFYRALVVAGTLSAVDAMVAALGARGFNVAAVHVR
ALREPFVRDWLGGLLADIAPDIIVNATSFAASSSSEPRVPGILEQADCPILQTAFAGVEE
GSWRGAARGLGPRDLAMNVALPEVDGRLFTRAVAFKAAERFDERTQCGIVVPRVAPDRVA
FVADLARNWAALRRTAPAERRVALVLANYPNRDGRIGNGVGLDTPASAAAILCGLGEAGY
AIGDAPRDGAALMRLMTGGVTNDLASLDRPGEVRLSLDVYRAAFAALPDSARSAMVDRWG
APEADPFVRDGAFRLAVHRFGHVAIAVQPARGYNIDPKSSYHDPALPPPHAYLAFHVWLA
QDFGAQALIHVGKHGNLEWLPGKAVSLSADCFPEICAGPVPQLYPFIVNDPGEGTQAKRR
IGAVILDHLTPPLTRAESYGPLKQLEALVDEYYLAAGMDPRRLDRLRRDIIDLARSQGLD
KDAGAAGDDDDALAAIDNYLCELKELQIRDGLHVFTASPQGRSRRDLLIALARTPRGLDH
PGQASLLRALADDLGLGFDPLDCVLGAPWHGPRPTVLADLSTDAWRTHGDMVERLELLAA
ALVDGGAPVGPASAAVLAAIADDLAPRVDACGPREAAALLAGLDGRFVLPGPSGAPTRGR
PDVLPTGRNFFSVDTRAVPTAVAWDLGQRSAQLLVDDYLQREGDYPRAIALSAWGTANMR
TGGDDIAQALALMGVRPRWEWSSGRVVGFEMMTLAELGRPRVDVTLRVSGFFRDAFPEQI
DLIDSAARAVMALDEPDEDNPAAARHRAEQAALVADGADAAEAARRAGARVFGSKPGAYG
AGLQAMIDEKIWHSRADLADVYLDWGGYAYGAGVEGDRERSLFATRLAQADAVVQNQDNR
EHDLLDSDDYYQFEGGIAAAIEHLKGARPLSYHNDHSRPERPVIRTLEDEIGRIVRARVT
NPKWIAGVMRHGYKGAFEIAASVDYLFAFAATTHAVRDHHFDAVHAAFIEDEAVRAFMAD
ANPAALRETAARLAEALERGLWKPKSNSAGMLLAELSGE