Protein Info for PS417_04375 in Pseudomonas simiae WCS417

Annotation: ABC transporter ATP-binding protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 269 PF00005: ABC_tran" amino acids 24 to 172 (149 residues), 107.1 bits, see alignment E=5.6e-35

Best Hits

Swiss-Prot: 57% identical to MLAF_ECOL6: Intermembrane phospholipid transport system ATP-binding protein MlaF (mlaF) from Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)

KEGG orthology group: K02065, putative ABC transport system ATP-binding protein (inferred from 100% identity to pfs:PFLU0888)

Predicted SEED Role

"Uncharacterized ABC transporter, ATP-binding protein YrbF"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A1N7TZR4 at UniProt or InterPro

Protein Sequence (269 amino acids)

>PS417_04375 ABC transporter ATP-binding protein (Pseudomonas simiae WCS417)
MSADNAYAVELKGLTFKRGTRSIFNNVDIRIPRGKVTGIMGPSGCGKTTLLRLMGMQLRP
SAGEVWVNGQNLPTLSRSDLFDARKHMGVLFQSGALFTDLDVFENVAFPLRVHTQLSDEM
IRDIVLLKLQAVGLRGAIDLMPDELSGGMKRRVALARAIALDPQILMYDEPFVGQDPIAM
GVLVRLIRLLNDALGITSIVVSHDLAETASIADYLYVVGDGQVLGQGTPEELMNADNPRI
RQFMTGDPDGPVPFHFPAADYRSDLLGKR