Protein Info for PS417_04320 in Pseudomonas simiae WCS417

Annotation: divalent cation transporter

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 297 transmembrane" amino acids 16 to 38 (23 residues), see Phobius details amino acids 46 to 67 (22 residues), see Phobius details amino acids 79 to 101 (23 residues), see Phobius details amino acids 110 to 131 (22 residues), see Phobius details amino acids 152 to 168 (17 residues), see Phobius details amino acids 188 to 210 (23 residues), see Phobius details amino acids 217 to 239 (23 residues), see Phobius details amino acids 245 to 265 (21 residues), see Phobius details amino acids 277 to 296 (20 residues), see Phobius details PF02535: Zip" amino acids 154 to 292 (139 residues), 71.1 bits, see alignment E=5.1e-24

Best Hits

KEGG orthology group: K07238, zinc transporter, ZIP family (inferred from 98% identity to pfs:PFLU0877)

Predicted SEED Role

"Metal transporter, ZIP family"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A1N7U725 at UniProt or InterPro

Protein Sequence (297 amino acids)

>PS417_04320 divalent cation transporter (Pseudomonas simiae WCS417)
MGTETLAISSGRMFRYAFGSLLLLAGTALLVAHGLAWLNLEPRILRALQGGSICALGTAL
GAVPVLVIRRMPVALSDTLLGFGAGVMLAATAFSLIVPGIAAAEGLGLSPWGASGLISFG
IMLGAFGLYLVDRKVSGASPEMLVGTPDKPVIPPRIWLFVFAIIAHNIPEGMAVGVSAGG
GMPDADSLAMGIALQDVPEGLVIALVLAGAGMSRGKAFLIGAASGLVEPVFAVLCAWLVS
LAEVVLPLGLALAAGAMLLVVTHEVIPESRRNGHEKLASLGLCIGFCLMMVMDTALG