Protein Info for GFF823 in Hydrogenophaga sp. GW460-11-11-14-LB1

Annotation: Outer membrane lipoprotein LolB

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 168 signal peptide" amino acids 1 to 37 (37 residues), see Phobius details PF03550: LolB" amino acids 42 to 151 (110 residues), 59 bits, see alignment E=2.9e-20

Best Hits

KEGG orthology group: K02494, outer membrane lipoprotein LolB (inferred from 55% identity to adn:Alide_0984)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (168 amino acids)

>GFF823 Outer membrane lipoprotein LolB (Hydrogenophaga sp. GW460-11-11-14-LB1)
MSVRTAFRPRQQARVAVLALAALLSACATPPRPAQPGEAVWSGRLSLQVESAPPQSFSAA
FDLRGTPGEGELQLTSPLGTTLATVMWTPQHAELRQGGQVTRRGNLDELTTELSGTAMPV
AALFGWLRGEQGQVPGWQADLSRQAEGRITARRSEPLPTAELRVVFQP