Protein Info for GFF818 in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

Annotation: Phage tail fiber protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1131 PF24801: FNIII-A_GpJ" amino acids 86 to 207 (122 residues), 134.5 bits, see alignment E=8.1e-43 PF13550: Phage-tail_3" amino acids 334 to 489 (156 residues), 125.8 bits, see alignment E=5.6e-40 PF24421: Ig_J" amino acids 609 to 713 (105 residues), 144.4 bits, see alignment E=4.1e-46 PF24489: Ig_J_second" amino acids 715 to 817 (103 residues), 134.6 bits, see alignment E=4.5e-43 PF09327: Phage_Tail_Tip" amino acids 844 to 971 (128 residues), 129.6 bits, see alignment E=2.6e-41 PF12421: Ig_GpJ_C" amino acids 1000 to 1131 (132 residues), 243.2 bits, see alignment E=2.5e-76

Best Hits

Swiss-Prot: 72% identical to TIPJ_LAMBD: Tip attachment protein J (J) from Escherichia phage lambda

KEGG orthology group: None (inferred from 70% identity to ecv:APECO1_2014)

Predicted SEED Role

"Phage tail fiber protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1131 amino acids)

>GFF818 Phage tail fiber protein (Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868)
MGKGGGSSKTPHEAPDDLKSSQMLTVVDAICEGPIEGPVDGLKSVRINKTPVLDSDGNAM
VHGVTVVYRVGEDEQSAMEGFEDSGAETLLGVEVKKSEPVTRTITTKTVDRLRFTFGVQS
LVSTSTKGDRNPTSVQMLIQFRRDGQWQVERDITITGKTTTQFLASVVIDDLPPRPFEVR
MMRITDDSTSDLLQNKTVWSGYTEIIDVKQCYPNTAVIGVKVDAEQFGSQQVTRNYLLRG
RIVPVPSNYDPVKRTYTGIWDGTFKPAWTDNPAWCVLDMLTHPRYGMGNRIGVADVDKWA
LYAIAQYCDQPVPDGFGGTEPRITCNAYLTDQRKAWDVLGDFCSLMRCMPVWNGSTLTFV
QDRPSDKVWTYTQSNVVMPADGAPFVYSFSALKERHNAAEVRYTDPNNGWETSTELVEND
AAIRRYGRNVLKMDAFACTSRGQAHRAGLWAITTELLETQTVDFSVGAEGLRHVPGDIIE
VCDSDYAGVTVGGRVLSVDSLSRTLTLDREVDIPAGGNVVLNLVGSNGQPVTVAVTAHPA
PDRVTVSQLPDGVAAYSVWGLKLPDLRQRLFRCVAIRENDDGTYAITAVQHVPEKESIVD
NGAKFDPLPGTSITNTPPAVQHLTTEILAEEGQYQARARWDTPRVVKGVNFSLRLTVKAE
DDSDRLASSLTLTETEHTFRNLTPGRYTLSVRAVNSQGQQGDPASTQFSISAPAAPSFIE
LTPGYFQITATPRQAVYDPTVQYEFWFSDAQITDIHQVENAARYLGTALYWIAASVNIRP
GRDYYFYIRAVNRVGKSAFVEATGQASNDAAGYLDFFKGQITESHLGKELLEKVDLTEDN
ASKLQQFSKEWQDANGKWNAMWGVKIEQTEDGRHYVAGLGLSMEDTPDGKISQFLVAADR
IAFINPQNGNQTPGFVMQGDQIFMNEAFLKYLSAPTITSGGNPPAFSLTPDGRLTAKNAD
ISGHINAISGALNNVVIAEDCTIQGTLRAERILGDIVKAVGKEFPYFREPATGAKRYASG
TLTVQIDDDQSFDRQIIIPPINFQGSYYGRNDTWDTCTLEVRRNGALIYSGTSSSVPESY
GATLDMPAGGGIVTLTFSVSTRGNSTGWPNSRISDLILMVVKKSTAGIRIS