Protein Info for GFF811 in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

Annotation: Phage tail length tape-measure protein 1

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1053 PF06791: TMP_2" amino acids 227 to 425 (199 residues), 184.6 bits, see alignment E=2.9e-58 PF24622: TMP_4" amino acids 652 to 729 (78 residues), 56.8 bits, see alignment 3e-19 TIGR01541: phage tail tape measure protein, lambda family" amino acids 692 to 1013 (322 residues), 285.2 bits, see alignment E=3.3e-89 PF09718: Tape_meas_lam_C" amino acids 847 to 921 (75 residues), 93.4 bits, see alignment 1.1e-30

Best Hits

Predicted SEED Role

"Phage tail length tape-measure protein 1"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1053 amino acids)

>GFF811 Phage tail length tape-measure protein 1 (Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868)
MDQIANLVIDLSVDAADFKNEVPRVKKLLDEVSGKTDLVTQRQKNLIETLKSQGRAYVDG
SIAASDAGTRQKQAMVMAAQGYDQVAQRVDMTQRHVAALSQKMQEERAQAAAVAAAQDQA
SAAFYRQIDSVKSLENGLQQLQRIQTQIRQARNSGGIAQQDYLALTSEVAAKTRTLTDAE
AAATKQKVRFIQRLKEQVTSQRLSSTEILRVKAAQLGVSSAADIYIRQMENAGTVTRSLG
LKSAAARREIGVLFGELARGNFGALRGSGITLANRAGWLETLMSPKGLAVGGTVTAIAAA
VYGLGKAWYSGTKEGEEFNKQLILTGNYAGKTAGQLQQMARSIAGNGITQHDAAGILAQV
VGSGAFGSTDLSRVANAAARLKQATGQDISETISQFKKLKDDPVNAVVALNDSLHFLTAT
QYQQISAAQAVGDSQLAAALAIQAYSDAVMQRTGAVQDNLGSLEKAWNWVRNAAVGAWDA
MLGVGRSPDTAMKRQDMFAQWQAAEKEYQVLSRNLKVDPDYSGSNPLQKADAERLRNARQ
SLALKKAAYDEADKAYAQEGLAAAMEKQRTDQQAQAIRSQQEFNQLVKNGTSQAEKRAQA
EQELNQLIAKNRRDAKDGVTALWTEKDISSARTGIEKRFKDPTPPKTAATRNDEASRLLL
RYSQQQAQVEGQIAAAKQSSGLNTDRMTEAHKQLLALQQRISDLSGKKLTADEKSVLAHK
TELVQALTLLDLKQQELQRQSALNDLKKKAVQLESQLKLEEQSQRQRHDLDLATAGMGDV
QKQRYQEQLTLRQKFAQQQEQLERDSRQKGTYGSAEYSEAEQKLRDSLNVQLNENRRYWQ
QLSVEQGNWKNGATRAFQNYTADAGNAAGVAEQLFSSAFSSMGNGLATFVTTGKLSFKSF
TASLLSDLAKIMAQMAMMQAVKGVGNALGFGVTANADGGVYQSASLSRYSGSVVNTPTFF
AFAKGAGVMGEAGPEAILPLKRGADGKLGVVAAGMGGMAMFAPQYHIAINNDAGNGQIGP
GALKVVYDLGRKAAADFIAQQGRDGGRLSGAYS