Protein Info for PS417_00040 in Pseudomonas simiae WCS417

Annotation: ATPase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 759 transmembrane" amino acids 26 to 47 (22 residues), see Phobius details amino acids 306 to 326 (21 residues), see Phobius details amino acids 332 to 350 (19 residues), see Phobius details amino acids 356 to 374 (19 residues), see Phobius details PF05226: CHASE2" amino acids 38 to 323 (286 residues), 181.6 bits, see alignment E=2.2e-57 PF02518: HATPase_c" amino acids 649 to 756 (108 residues), 98.3 bits, see alignment E=3.8e-32

Best Hits

KEGG orthology group: None (inferred from 93% identity to pfs:PFLU0007)

Predicted SEED Role

"Signal transduction histidine kinase"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A1N7TV11 at UniProt or InterPro

Protein Sequence (759 amino acids)

>PS417_00040 ATPase (Pseudomonas simiae WCS417)
MMLWGKAEKRQPTHAQRLFHGLVREWLWIGLLLLPITAYLSLSPGLALNNPLYDSLRRLS
PLPVDPRILLVTIDDASLKKLGRWPWPRGLHADLIDRLSAAQPAGILFDVIFSEPGDPAN
DKRLAESVCNAGNVLLPLVREGAANYSQPDAQMMPLLKCAKGVGHINVEADSDGVVRSLY
LREGPPDAKAPQLAWLAYEMSGELSEMPGEPQQSVTQQWHREHAIRIPFIAPHTRFPSVS
YVSVLHGEVAPERLRNRLILVGSTASGMGDRFVTPLSSTVGTTAGLEIQANVLNGLLQGR
SIVDLPGWLAALIATAWVALLLGLLLYRPRYALWMTLGCMAVALLVSLALLRLGHWWSPA
ACLIGLLLSYLIWNWRRLSVILAYFGWELARLDNEPKVLPERRRAPASKGDVLQARIFAL
EQAVSRTRDTRRFMADGLECLPVATLITDPMGNILLANRIAREVFGNELVTQNLLEQLAD
LGYPPLHNGVRPALSALELVEFRDIHQRSLRMELAPLLPAEGDVALGWLLSLTDLSKERD
AQQHRETMLRFLSHDLRAPHSAILALLDVHNGESPVFAQIEQQVRRALGLTESFVQLAKA
EADGYQFQPTLFAMLVMDAFDQVALIAQLKGIHLVHDLDEADEGMVSADQSLLTRALFNV
LENAIKYSPSGTTVRLRHSSEQGWLECRISDQGPGIAAEDLPELFNQYRRFDSSQGSEGL
GLGLTMVKAVVERHGGRISCESEVGKGTTFSLRLPLLDD