Protein Info for GFF7871 in Variovorax sp. SCN45

Annotation: probable membrane protein NMA1128

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 157 transmembrane" amino acids 20 to 43 (24 residues), see Phobius details amino acids 64 to 86 (23 residues), see Phobius details amino acids 98 to 124 (27 residues), see Phobius details PF04306: DUF456" amino acids 37 to 156 (120 residues), 118.2 bits, see alignment E=1.7e-38

Best Hits

Swiss-Prot: 32% identical to YQGC_BACSU: Uncharacterized protein YqgC (yqgC) from Bacillus subtilis (strain 168)

KEGG orthology group: K09793, hypothetical protein (inferred from 62% identity to xcc:XCC1421)

Predicted SEED Role

"probable membrane protein NMA1128"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (157 amino acids)

>GFF7871 probable membrane protein NMA1128 (Variovorax sp. SCN45)
MQTTPGRLSGQEESMNPDTFYYILAAVLVIVGIIGTILPALPGMPLVFGGMLLAAWVSGF
EKVGWITLTVLAVLTVLSMVVDFVATAMGAKRVGASRLAIIGSVIGTFAGLAFGLIGVFV
GPFVGALLGEWIHTRQLDKATKVGIGTWVGIIVGTGI