Protein Info for GFF776 in Variovorax sp. SCN45

Annotation: Putative large exoprotein involved in heme utilization or adhesion of ShlA/HecA/FhaA family

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 200 400 600 800 1000 1200 1400 1600 1800 2000 2200 2400 2600 2800 2941 signal peptide" amino acids 1 to 36 (36 residues), see Phobius details PF05860: TPS" amino acids 41 to 303 (263 residues), 167.1 bits, see alignment E=1.1e-52 TIGR01901: filamentous hemagglutinin family N-terminal domain" amino acids 80 to 176 (97 residues), 73.5 bits, see alignment (E = 1e-24) PF05594: Fil_haemagg" amino acids 229 to 306 (78 residues), 12.2 bits, see alignment (E = 3.7e-05) amino acids 408 to 465 (58 residues), 5.2 bits, see alignment (E = 0.0059) amino acids 451 to 509 (59 residues), 5.4 bits, see alignment (E = 0.0051) amino acids 483 to 530 (48 residues), 5.5 bits, see alignment (E = 0.0048) amino acids 514 to 585 (72 residues), 3.8 bits, see alignment (E = 0.016) amino acids 720 to 762 (43 residues), 12.7 bits, see alignment (E = 2.6e-05) amino acids 763 to 812 (50 residues), 5.9 bits, see alignment (E = 0.0035) amino acids 1080 to 1161 (82 residues), 21.6 bits, see alignment (E = 4.4e-08) amino acids 1449 to 1496 (48 residues), 3.6 bits, see alignment (E = 0.018) amino acids 1751 to 1798 (48 residues), 12.9 bits, see alignment (E = 2.2e-05) TIGR01731: adhesin HecA family 20-residue repeat (two copies)" amino acids 311 to 332 (22 residues), 7.2 bits, see alignment (E = 0.00055) amino acids 420 to 457 (38 residues), 10.2 bits, see alignment (E = 6.5e-05) amino acids 499 to 539 (41 residues), 15.7 bits, see alignment (E = 1.2e-06) amino acids 541 to 568 (28 residues), 20.4 bits, see alignment (E = 4e-08) amino acids 565 to 602 (38 residues), 24.5 bits, see alignment (E = 2.1e-09) amino acids 735 to 774 (40 residues), 15.7 bits, see alignment (E = 1.2e-06) amino acids 777 to 817 (41 residues), 18.7 bits, see alignment (E = 1.4e-07) amino acids 818 to 857 (40 residues), 18.8 bits, see alignment (E = 1.2e-07) amino acids 868 to 907 (40 residues), 15.2 bits, see alignment (E = 1.7e-06) amino acids 909 to 950 (42 residues), 12.8 bits, see alignment (E = 9.5e-06) amino acids 934 to 968 (35 residues), 18.5 bits, see alignment (E = 1.6e-07) amino acids 995 to 1030 (36 residues), 25.7 bits, see alignment (E = 8.4e-10) amino acids 1086 to 1122 (37 residues), 13.2 bits, see alignment (E = 7.1e-06) amino acids 1133 to 1161 (29 residues), 9.5 bits, see alignment (E = 0.00011) amino acids 1191 to 1223 (33 residues), 11.4 bits, see alignment (E = 2.7e-05) amino acids 1762 to 1799 (38 residues), 8.5 bits, see alignment (E = 0.00021) amino acids 1804 to 1837 (34 residues), 7.3 bits, see alignment (E = 0.00053) PF13332: Fil_haemagg_2" amino acids 1936 to 1991 (56 residues), 18.8 bits, see alignment (E = 2.2e-07) amino acids 2007 to 2068 (62 residues), 26.2 bits, see alignment (E = 1.2e-09) amino acids 2088 to 2170 (83 residues), 31.9 bits, see alignment (E = 2.2e-11) amino acids 2240 to 2411 (172 residues), 120 bits, see alignment 1.8e-38

Best Hits

Predicted SEED Role

"Putative large exoprotein involved in heme utilization or adhesion of ShlA/HecA/FhaA family"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (2941 amino acids)

>GFF776 Putative large exoprotein involved in heme utilization or adhesion of ShlA/HecA/FhaA family (Variovorax sp. SCN45)
MVVQETASSTGKGASKATSVAGGVFAGVALAGSLAVAPLHAQIVGAPNVPGNQRPTVLVA
PNGVPLVNIQTPSAAGVSRNIYNQFSVGPNGAILNNSRANVQTQLGGFVQANPNLATGAA
RIILNEVNGGSPSQLRGYIEVGGQRAEVIIANPAGISVDGGGFINASRATLTTGTPQFNA
LGGLDSFLVRGGTVTIDGAGLDASKTDYAAILARAVQVNAGIWASELKVVTGANEVGADH
GQITPTAGTGVAPTFALDVAALGGMYANKIVLVGSEAGLGVRNAGNIGAGAGGLVVTAAG
RLENIGTLEGQRIELTTPGDIDNRGGTIRQTSFAGLTIASPILSNTNGGVIGAEPVSVGA
SGSGNTSPGTANPVSGGSTASASAPDNGSSGASGAPASTTYAPPAPGVITAGGTISNDGG
KIYAGGPITLNTPQVNNAGGLLNVATMAVAGPSFSNAGGTLTVSQNFGANVGTFDNMGGK
LNAGSLQINTTGDFINVDGKLTSDGDVNLAIGGNADNTRGTISATSALTAGIVGATNNTS
GTLIANNNVALSAASLDNTKGGIQSAGANTQLVVASQLINAAGTIGAAKDVSIQAGSLSN
SGSVRGTNDTALNVSGALINDRSITAGRNTQIVAGSVQGSRTGVFGAGVQNDGSSGGSGD
LRIAASGALIANGTNFAAGNTVLQGASVDLSSSETNGAEIAITAANGNVTTSRAKVVTPG
TLKVTATGAVFNIAGTLAADGAATVDAGSLDNSSGTLASVTNNLRIKTIGATSNKAGSLL
AAGAVELENSGLDNTEGKLSGNSLSVATGNGQLDNTHGTLTATTTVALSSGALVNDAGLI
QSGGAMTIDTNGQSLTNTNAANYTTKQGGITSADTLKLKTGTVTNTAGFIGAKNSLDAKT
QGFTNTGGGEVFGQSTVAINTNGANYDNSGGKTLAVGDLGIDAGGITNTGGLIRSTATTT
LNAGSVINKDSQGTDQGIEGTSVSITAATLTNKFGAIRADGNATLTSTTKIDNSQGLVSA
GDTLTVQDPGTPGSLSVVNTGGTLVASKKVVLEAGAVTWDGKLLSLGDMDLAVKQDISFA
AGSETVANKNLTLSTTGNITNSGRLAAGKELKLSAKDIENTATGDIQGETTILKASGTLT
NRGVIDGKTTSINAGTLNNRGTGRIYGDQISIGAVTLNNETETVGGVASSGTIAARRRLD
LGVTNLNNRDGALIFSDGDLAIGGALVDGKASGSAGTVNNHAATIEATRDVDIRTSVLNN
TNGGVTWAMQGGKASDSITEYALPGSATRYTVDQLAFVSVAAASYDFVRMMGGLWPSFIG
QPDGPIIGPFAGIVVPSAKYPMSRFKTYYAKAPQNSSDLHGSRPVGTDFQEDINEPGAWY
SRTNPIWATFGVAPPATDTPDDTQRAAYLEAHQALDAVTEAFIKYVYESRASAYYSWTYS
ESNTTPVLQTSAPGRIVAGRKMDIAVDSGTNDMSQILAGGALNVTGGKITDKNLEVSGSQ
NRTGWQYYNNGSGNMPMPTPYNVSTPITVTLAAARQDGNVAVSGSGTPTGTLAPGKTNQG
VAGASGVNGSGHAPGTNGPIVPPIIEVKLTASSGTSQVVRTTMPGLALPTASLFRTLSGA
SSRYLVETDPRFANYRNWLGSDYLLNNLGLDPDNTLKRLGDGYYEQRLVREQLAQLTGYR
YLDGYDSDEKQYAALMDAGVTVARQYGLRPGIALTDTQMAQLTSDIVWLVEQAVTLPDGS
IQRVLVPQVYVRVKNGDIDGSGALLSGKEVNIQLDGDLVNSGTVAGRSTVKITAENIQNL
NGRISGGNVDLNARTDLNNIGGIIDADSKLKIEAGRDINVRTTTSSGALAMDIQPGAASL
RGATIVDRVAGLYVSDPKGTLVASAGRDVNLIGALISNSGKEGTTEIGAGRDINLGTVTT
SRQEATIRSAGNYRAEASTQEFGTRIEATGDISLTAKRDVNVRAGAINSTDGELGIAAKR
DINIDAGQSTSALNEGLRISRSGEKRTEQGSFNSTSVIGSSLGGKTVILDAGKDIKIRGS
NVVSDKGTELWAGNDVTIEAATQTRDSQYVRQQSRSGMFDGGSGWTWGRQDSRSTRNTDE
TTAVGSTVGAISGNVIITAGNQYRQVGSDVIAPGGDIDIQARNVQIVEARETSRSESTQS
FSQSGITLGFKAPLIDTLRNLEDTSQAMKDTKDDRMKALGAASMALSGYSTYQGISNDVA
GFASGQGAQSLTGGATLMLGRASSETTSTQDGDIALASRVQASGNVTITATGGGKDSHIL
VRGSEISAGKSVNLSADNSVTLEAVANSSSQSSTSRSSSGSVGVGFNVGATTGLTIEVAA
GSQSGRDNGTDRSWTNTTVSAGRQVNIISGGDTSLRGATVSGNRINAVVGGNLQIETLQD
TSTYHSQNSGAGFSATICVWYCYGESTVSANAHNLRGDGDFASATKQSGFLAGDGGFDVK
VGGNTNIVGGVISSTDAAVDGGKNSFASGSLTMRDLLNHDVFRGSGYSVSVSSSGSPSAG
LGNSHVNLSSITQSGISGIAGNTNVRTGVDSSNALQMMDREREMRSISAQQQITQAFTGQ
IPTTASLLSILFSTPANASTSAGNHPDAERVVSGATQLQSSIDKILSLGPEDLPPAQRQI
FEKIQNYLAQPEIQNLIRQAYDDPAAYQQSVNQQNAARGDTLIGGLATEPIGYRFCFGTV
CTPDISPPPLIDPRTGEPNTELPRSLGQIKFTSPKFETVLAASPVLASLLVALGYDFNNG
GFGAGGLLPQIGGPSVSPLPPADLNQQGGTSIPGLILPSYIIPGKKIPDIEAVVNEGFGA
GAVPPNSNLTYSVPPSITDGRGNLPPGIGGVGTPIPMPPSANPNQTAEEFAKNAFNGQAP
LVVVPIGGGWLAKMPDGTAILYRPAGQATKTSPSTASVDINSPSVRDINRNEPAKFKFPK
Y