Protein Info for GFF775 in Xanthobacter sp. DMC5

Annotation: Aliphatic sulfonates import ATP-binding protein SsuB

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 271 PF00005: ABC_tran" amino acids 39 to 178 (140 residues), 114.3 bits, see alignment E=3.4e-37

Best Hits

Swiss-Prot: 49% identical to SSUB_BACLD: Aliphatic sulfonates import ATP-binding protein SsuB (ssuB) from Bacillus licheniformis (strain ATCC 14580 / DSM 13 / JCM 2505 / NBRC 12200 / NCIMB 9375 / NRRL NRS-1264 / Gibson 46)

KEGG orthology group: K02049, sulfonate/nitrate/taurine transport system ATP-binding protein (inferred from 75% identity to rsq:Rsph17025_0748)

Predicted SEED Role

"Alkanesulfonates ABC transporter ATP-binding protein / Sulfonate ABC transporter, ATP-binding subunit SsuB" in subsystem Alkanesulfonate assimilation or Alkanesulfonates Utilization

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (271 amino acids)

>GFF775 Aliphatic sulfonates import ATP-binding protein SsuB (Xanthobacter sp. DMC5)
MNAPFHSPSPQAPATAVPALDIRHVSKAFVVDGKAVEVLADISLSVEAGSFVSIVGASGC
GKSTLLRLILGLDLDYAGEIHLDGRPVEGPGPERSIVFQEHRLLPWLTVEGNVGAALLHS
GLDAAARRRSVAEHLELVGLEAFAKAYPAQLSGGMAQRVAIARALANRPRFLLLDEPLGA
LDALTRLRLQGELKRIVAHEGATAVLVTHDVDEAVFLGHRIVVLHPRPGRIAAVLEVPEE
ARADRSSPAFVALRDRVLELLGVSLGEGRAR