Protein Info for GFF7680 in Variovorax sp. SCN45

Annotation: AAA+ ATPase superfamily protein YifB/ComM, associated with DNA recombination

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 206 PF03632: Glyco_hydro_65m" amino acids 2 to 65 (64 residues), 65.4 bits, see alignment E=4.8e-22 PF01078: Mg_chelatase" amino acids 147 to 206 (60 residues), 81.5 bits, see alignment E=5.7e-27

Best Hits

Predicted SEED Role

"Maltose phosphorylase (EC 2.4.1.8) / Trehalose phosphorylase (EC 2.4.1.64)" in subsystem Maltose and Maltodextrin Utilization or Trehalose Biosynthesis or Trehalose Uptake and Utilization (EC 2.4.1.64, EC 2.4.1.8)

MetaCyc Pathways

KEGG Metabolic Maps

Isozymes

No predicted isozymes

Use Curated BLAST to search for 2.4.1.64 or 2.4.1.8

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (206 amino acids)

>GFF7680 AAA+ ATPase superfamily protein YifB/ComM, associated with DNA recombination (Variovorax sp. SCN45)
SYDYYTAVTTHDSTLSASVFGILASEVGHAEQAERFFHDNLRVDLDDLHGNTDHGVHMAA
LAGTWLGLASGFAGLRAIDGVLPAALAAADAGRRLVVPAGNGAEAALASRVEARTARTLS
EVCAMLCERASLPRAVAPPLARAPELDMRDVRGQAQARRALEIAAAGGHHLLLIGPPGCG
KTLLASRLPGLLPEAGEDAALETAAI