Protein Info for GFF764 in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

Annotation: Ascorbate-specific PTS system, EIIC component

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 447 transmembrane" amino acids 15 to 36 (22 residues), see Phobius details amino acids 44 to 65 (22 residues), see Phobius details amino acids 106 to 125 (20 residues), see Phobius details amino acids 146 to 176 (31 residues), see Phobius details amino acids 194 to 207 (14 residues), see Phobius details amino acids 233 to 258 (26 residues), see Phobius details amino acids 270 to 290 (21 residues), see Phobius details amino acids 310 to 326 (17 residues), see Phobius details amino acids 331 to 352 (22 residues), see Phobius details amino acids 357 to 376 (20 residues), see Phobius details amino acids 384 to 405 (22 residues), see Phobius details amino acids 424 to 442 (19 residues), see Phobius details PF03611: EIIC-GAT" amino acids 18 to 412 (395 residues), 328.6 bits, see alignment E=3.1e-102

Best Hits

Swiss-Prot: 38% identical to ULAA_SALTY: Ascorbate-specific PTS system EIIC component (ulaA) from Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)

KEGG orthology group: K03475, PTS system, ascorbate-specific IIC component (inferred from 100% identity to sed:SeD_A0988)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (447 amino acids)

>GFF764 Ascorbate-specific PTS system, EIIC component (Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868)
MEGVQTMFAKFIDVIQTFLTEPAILIGILVGVGYALDKKTPIKIITGMISAMVGLMMVLF
GGFQFSATFKPVAEAVSKAYGVHGYLMDSYAMKAATQIALGDNFGYVGYVFVLAFFTNLL
LVLFGRYTGAKGIFLTGNTGVSHSQAVLWLIVFWLGFGWVQSIVIAGVLTGVFWAFSTTL
IVKPIAKVTNNAGFTIAHNQMLGLWFFSKFAHKFGDPEKHDAENLKLPGWLAIFNHNVTA
IAIVMTLFVGGFLLATGIDNVQLMAKGKPWYIYIINLGLQFSMYMVILLQGVRMMVGEIN
GSFKGWQDRFIPNAIPAVDVAALLPFSPNAATLGFVFCTFGTIFSMGILLLIHSPIMVLP
GFVPLFFSGGPIGVLANRMGGYRSVIICTFLLGIIQTFGTVWAIPLTGLAKEGVGWTGIF
DWATLWPAICELLKFIASTFHLGPYSI