Protein Info for GFF7520 in Variovorax sp. SCN45

Annotation: Membrane-bound lytic murein transglycosylase D precursor (EC 3.2.1.-)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 152 PF01464: SLT" amino acids 26 to 124 (99 residues), 101.7 bits, see alignment E=9.6e-34

Best Hits

Predicted SEED Role

"Membrane-bound lytic murein transglycosylase D precursor (EC 3.2.1.-)" (EC 3.2.1.-)

KEGG Metabolic Maps

Isozymes

Compare fitness of predicted isozymes for: 3.2.1.-

Use Curated BLAST to search for 3.2.1.-

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (152 amino acids)

>GFF7520 Membrane-bound lytic murein transglycosylase D precursor (EC 3.2.1.-) (Variovorax sp. SCN45)
CFACAAQPGVNFGTLRLNTVAYASEIAAAARQHGVEEAIVRAIIHAESAYNPTALSRVGA
QGLMQLMPATARRFGVGNAFDASQNIQGGVQYLAWLLKRFNGDLTLAAAGYNAGEGAVDK
YKGVPPYAETQRYVQRVAVLAQRYRAATVVQR