Protein Info for GFF749 in Xanthobacter sp. DMC5

Annotation: UvrABC system protein A

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1045 TIGR00630: excinuclease ABC subunit A" amino acids 28 to 953 (926 residues), 1465.5 bits, see alignment E=0 PF17760: UvrA_inter" amino acids 154 to 260 (107 residues), 123.9 bits, see alignment E=5.3e-40 PF17755: UvrA_DNA-bind" amino acids 318 to 427 (110 residues), 140.3 bits, see alignment E=6.2e-45 PF00005: ABC_tran" amino acids 818 to 889 (72 residues), 26.1 bits, see alignment 2.4e-09

Best Hits

Swiss-Prot: 80% identical to UVRA_BRADU: UvrABC system protein A (uvrA) from Bradyrhizobium diazoefficiens (strain JCM 10833 / IAM 13628 / NBRC 14792 / USDA 110)

KEGG orthology group: K03701, excinuclease ABC subunit A (inferred from 60% identity to aau:AAur_2080)

Predicted SEED Role

"Excinuclease ABC subunit A" in subsystem DNA repair, UvrABC system

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1045 amino acids)

>GFF749 UvrABC system protein A (Xanthobacter sp. DMC5)
MSDRAASPRSNPAEAPVREVPRRDARTLSVRGAREHNLKNVDLEIPRDSLVVFTGLSGSG
KSSLAFDTIYAEGQRRYVESLSAYARQFLEMMQKPDVDQIDGLSPAISIEQKTTSKNPRS
TVGTVTEIYDYMRLLWARTGVPYSPATGLPIESQTVSQMVDRTLALPEGTRLYLLAPVVR
GRKGEYRKELADWMKKGFQRVKVNGAFHEIAEAPALDKKFKHDIDVVVDRIVVRADLAQR
LADSFETALGLADGIAVAEFADEKDEAGAPRRIIFSEKFACPVSGFTIPEIEPRLFSFNN
PFGACPACDGLGVEQTIDPDLVVPDKARSLKQGAIAPWAKSTSPYYGQTLDALAKHYHFK
LNVPFADLPEQAREVLLFGSGSEKITFHYDDGMRAYETSKTFEGVVRNLDRRWKETDSDW
AREEISKYFSTVPCKVCNGYRLKPEALAVKIAGRHIGEIGELSVRAAAGWFESLPAQLTD
KQNEIAGRILKEIRERLRFLLDVGLEYLTLARSSGTLSGGESQRIRLASQIGSGLTGVLY
VLDEPSIGLHQRDNERLLGTLKHLRDLGNTVIVVEHDEDAILAADHVVDVGPGAGIHGGE
IVAQGTPAEILANPASLTGRYLTGELSVGVPARRKPNPKRMLKLTGARGNNLKNVTAEIP
LGLFTCITGVSGGGKSTLLIDTLYKAVARRLNGASEAPAPFDKLEGLEHLDKVIDIDQSP
IGRTPRSNPATYTGAFTPIREWFAGLPEAKARGYGAGRFSFNVKGGRCEACQGDGVIKIE
MHFLPDVYVTCDVCKGKRYNRETLEVTFKNKSIADVLDMTVEEGAQFFKAVPSVREKLET
LHRVGLDYVKVGQQATTLSGGEAQRVKLSKELSRRATGRTLYILDEPTTGLHFHDVKKLL
EVLHELVEQGNSVVVIEHNLEVIKTADWILDLGPEGGDGGGEIVVAGTPETVAASKRSHT
GRFLAEVLARRPFADDRKASAGTDAKPAAAGRGKAARRPVAEDVEAGTDTPVADAAAIVP
EEAASAEAPEAPRVARGRRRRQAAE