Protein Info for GFF746 in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

Annotation: Putative permease

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 202 transmembrane" amino acids 20 to 48 (29 residues), see Phobius details amino acids 60 to 79 (20 residues), see Phobius details amino acids 113 to 142 (30 residues), see Phobius details amino acids 154 to 175 (22 residues), see Phobius details PF01569: PAP2" amino acids 62 to 175 (114 residues), 49.1 bits, see alignment E=2.4e-17

Best Hits

Swiss-Prot: 78% identical to YBJG_ECOLI: Putative undecaprenyl-diphosphatase YbjG (ybjG) from Escherichia coli (strain K12)

KEGG orthology group: None (inferred from 98% identity to sew:SeSA_A1017)

MetaCyc: 78% identical to undecaprenyl pyrophosphate phosphatase (Escherichia coli K-12 substr. MG1655)
Undecaprenyl-diphosphatase. [EC: 3.6.1.27]

Predicted SEED Role

"Putative permease"

MetaCyc Pathways

KEGG Metabolic Maps

Isozymes

Compare fitness of predicted isozymes for: 3.6.1.27

Use Curated BLAST to search for 3.6.1.27

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (202 amino acids)

>GFF746 Putative permease (Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868)
MLENLNNSLFYFINATPDSAQWIISLAIFIAKDVINIVPLLAVVLWLWGPRDRVCAQRQL
IVKIGIALIISLAVSWTMGHLFPHDRPFVDHIGYNFLHHAADDSFPSDHGTVIFTFALAF
LFWHRLWSGIVMMAIAITIAWSRVYLGVHWPLDMIGALLVAMLGCLSAQLIWQWYGAPLY
QALQRCYRFCFALPIRKGWVRD